View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12548_low_4 (Length: 392)
Name: NF12548_low_4
Description: NF12548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12548_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 3584115 - 3584491
Alignment:
| Q |
1 |
actaaaatcagcgccttcaatgatggcgcctccaaggtcactccgggtgaggactgttctagaaagaatggcattcgtaagattggcttcattaagaacc |
100 |
Q |
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| T |
3584115 |
actaaaatcagcgccttcaatgatggcgcctccaaggtcactccgcgtgaggactgttctagaaagaatggcattcgtaagattggcttcattaagaacc |
3584214 |
T |
|
| Q |
101 |
tgtatacacagtacatcccaaacatgaaaacggatataaataaaatcagagaaaaaagcatacttttagaattaatcagttttatttgatgtactagtag |
200 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3584215 |
tgtatacatagtacatcccaaacatgaaaccggatataaataaaatcagagaaaaaagcatacttttagaattaatcagttttatttgatgtactagtag |
3584314 |
T |
|
| Q |
201 |
ttaccatgcgatccatcaatgtatcactcaaatcagcacctaaaagatgttgcgcnnnnnnnntcaatgaaattataatacattgtaaaggcgttagata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
3584315 |
ttaccatgcgatccatcaatgtatcactcaaatcagcacctaaaagatgttgcgcaaaaaaaatcaatgaaattataatacattgtaaaggcgtcagata |
3584414 |
T |
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| Q |
301 |
ctttttagaaatagaaacccactattaacttatacctgtaaaatttgctttgaatgcaacagctttctccatgtatg |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3584415 |
ctttttagaaatagaaacccactattaacttatacctgtaaaatttgctttgaatgcaacagctttctccatgtatg |
3584491 |
T |
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