View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12549_high_1 (Length: 521)
Name: NF12549_high_1
Description: NF12549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12549_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Complemental strand, 5921207 - 5920713
Alignment:
| Q |
18 |
cttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctttaccaatttcagtctctgcttcagatgatagtaacatacaat |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5921207 |
cttcctccgctcaagaaggtttactctcttgtggtgcaagaagaaaacaataattctttaccaatttcagtcactgcttcagatgatagtaacatacaat |
5921108 |
T |
|
| Q |
118 |
tgaatgcttctgaggttaagaaatcacaaggacgtggtaaaggttctcttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagact |
217 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5921107 |
tgaatgcttatgaggttaagaaatcacaaggacgtggtaaaggttct--tttgttcattctcaaaaacctactacgtattgcaccttttgtcacaagact |
5921010 |
T |
|
| Q |
218 |
aatcacacagttgatttttgttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatgaaa |
317 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
5921009 |
aatcacacaattgatttttgttatcaaaaacatggctaccctagttttcctaagcaacaatcaagaggaaatgcagctactcatgagatccttgatgaaa |
5920910 |
T |
|
| Q |
318 |
atggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttcc-ttgctacaacatgcta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || | |
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| T |
5920909 |
atggtgcattggatcatggtttggggggctctacaggttctggtacctgtttgtctccagagcaatatactcaacttgtttcctttgctacaacaggcaa |
5920810 |
T |
|
| Q |
417 |
gtttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtccaagtcactccttttgtttctattagcatctctgcttctcc |
513 |
Q |
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| T |
5920809 |
gtttggtttcctcatcatctctcccttctacttcaaattccaccaccaaccatatccaagtcactccttttgtttctactagcatctctgctactcc |
5920713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 26968721 - 26968778
Alignment:
| Q |
366 |
gtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggt |
423 |
Q |
| |
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|||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||||| |
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| T |
26968721 |
gtttatctcaagagcaatatgctcaactagtttccttgctacaacaggctagtttggt |
26968778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 17118914 - 17118969
Alignment:
| Q |
197 |
tgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
252 |
Q |
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| T |
17118914 |
tgcacattttttaacaagaataatcatactgttgatttttgttatcaaaaacatgg |
17118969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 513
Target Start/End: Complemental strand, 20325509 - 20325022
Alignment:
| Q |
18 |
cttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctttaccaatttcagtctctgcttcagatgatagtaacatacaat |
117 |
Q |
| |
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||||| ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20325509 |
cttccacctcttaataaagtttattctcttgtggtgcaagaagaaagcaataactctttaccaatttcaatctctgcttcagatgatagtaacatacaat |
20325410 |
T |
|
| Q |
118 |
tgaatgcttctgaggttaagaaatcacaaggacgtggtaaaggttctcttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagact |
217 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||| ||||| ||||||||||| ||| |
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| T |
20325409 |
tgaatgcttctgaggttaagaaatcccaaggacgtggtaaaggtt-----ttgttaattctcaaaaacctaataggtactgcactttttgtcacaaaact |
20325315 |
T |
|
| Q |
218 |
aatcacacagttgatttttgttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatgaaa |
317 |
Q |
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||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| ||| | ||| | |||||||||||| |||||||| |
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| T |
20325314 |
aatcacacagttgatttttgttatcaactacatggtcatcctagttttcctaagcaacaatctaaagtgactgc---ttctcatgagatccctgatgaaa |
20325218 |
T |
|
| Q |
318 |
atggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctag |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||| |
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| T |
20325217 |
atggtgcattggatcatggtttggggggctctacaggttctggtactagtttgtctccagagcaatatactcaacttgtttccttgctgcagcaggctag |
20325118 |
T |
|
| Q |
418 |
tttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtccaagtcactccttttgtttctattagcatctctgcttctcc |
513 |
Q |
| |
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|||| ||||||||||||||| ||| ||||||||||||| |||||||| ||||||||| ||||||||||||||| | || ||| ||||||||||| |
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| T |
20325117 |
tttgatttcctcatcatctcctcctcctacttcaaatgctaccaccaatcatgtccaaaccactccttttgtttccaataacatttctgcttctcc |
20325022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 15756210 - 15756259
Alignment:
| Q |
203 |
ttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
252 |
Q |
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||||||||||||||||||||||| | || ||||| |||||||||||||| |
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| T |
15756210 |
ttttgtcacaagactaatcacactttggaattttgctatcaaaaacatgg |
15756259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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