View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12549_high_2 (Length: 453)
Name: NF12549_high_2
Description: NF12549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12549_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Complemental strand, 22632201 - 22631778
Alignment:
| Q |
20 |
cagaccaccgcacttcatcttctccagcgacaaggtgagtttcgacaaatccaaggttattgcagaatcaattcagaaataaaatgcttcaccatggtta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| |
|
|
| T |
22632201 |
cagaccaccgcacttcatcttctccagcgacaaggtgagtttcgacaaatccaaggttattgtagaatcaattataaaacaaaatgcttcaccatggtta |
22632102 |
T |
|
| Q |
120 |
ttgctttccttgtctgtcttcaaaaacaacacttcagcatcatgcatggaaccttttgatttctgcgatctggtcaacccgttaaatcattgccacccat |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22632101 |
ttgctttccttgtctgccttcaaaaacaacacttcagcat----catggaaccttttgatttctgcgatctggccaacccgttaaatcattgccacccat |
22632006 |
T |
|
| Q |
220 |
aaattcgacagaattcatatgcattgaagtgggaagcagccaacttttagcttcaaa-------------caaatcaataataacttgtttggattctac |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22632005 |
aaattcgacagaattcatatgcattgaagtgggaagcagacaacttttagcttcaaacaaaccaagaaaccaaatcaataataacttgtttggattctac |
22631906 |
T |
|
| Q |
307 |
acttgtgttgttttatcacagatgcaattttgtttactctttctatgtcatgacaaaagctgaagatacatgatttcaagcttcaacagattcattgatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22631905 |
acttgtgttgttttatcacagatgcaattttgtttactctttctctgtcatgacaaaagctgaagattcatgatttcaagcttcaacagattcattgatt |
22631806 |
T |
|
| Q |
407 |
cgaatttggatgttaatgcttccaccca |
434 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
22631805 |
cgaatttggatgttaatgcttctaccca |
22631778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 28323447 - 28323508
Alignment:
| Q |
381 |
ttcaagcttcaacagattcattgattcgaatttggatgttaatgcttccacccatcagtgaa |
442 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||| |
|
|
| T |
28323447 |
ttcaagcttcaacaaattcattgattcgaatttcgatgttaatgcttcctgccaccagtgaa |
28323508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 28323308 - 28323393
Alignment:
| Q |
198 |
ccgttaaatcattgccacccataaattcgacagaattcatatgcattgaagt----gggaagcagccaacttttagcttcaaacaaa |
280 |
Q |
| |
|
||||||||| ||||||||| |||||| |||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
28323308 |
ccgttaaattattgccaccg-taaatttgacataattcgcatgcattgaagtagatgggaagcagccaactttgagcttcaaacaaa |
28323393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 434
Target Start/End: Complemental strand, 36234002 - 36233577
Alignment:
| Q |
20 |
cagaccaccgcacttcatcttctccagcgacaaggtgagtttcgacaaatccaaggttattgcagaatcaattcagaaataaaatgcttcaccatggtta |
119 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| |
|
|
| T |
36234002 |
cagaccaccacgcttcatcttctccagcgacaaggtgagtttcgacaaatccaaggttattgcagaatcaattcaaaaacaaaatgtttcaccatggtta |
36233903 |
T |
|
| Q |
120 |
ttgctttccttgtctgtcttcaaaaacaacacttcagcatcatgcatggaaccttttgatttctgcgatctggtcaacccgttaaatcattgccacccat |
219 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36233902 |
ttgctttccttgcctgccttcaaaaacaacacttcagcat----cgtggaaccttttgatttctgcgatctggccaacccgttaaatcattgccacccat |
36233807 |
T |
|
| Q |
220 |
aaattcgacagaattcatatgcattgaagtgggaagcagccaacttttagcttcaaa-------------caaatcaataataacttgtttggattctac |
306 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36233806 |
aaattcgacataattcatatgcattgaagtgggaagcagccaacttttagcttcaaacaaaccaagaaaccaaatcaataataacttgtttggattctac |
36233707 |
T |
|
| Q |
307 |
acttgtgttgttttatcacagatgcaattttgtttactctttctatgtcatgacaaaagctgaagatacatgatttcaagcttcaacagattcattgatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
36233706 |
acttgtgttgttttatcacagatgcaattttgtttactctttctctgtcatgacaaaagctggagattcatgatttcaagcttcaacaaattcattgatt |
36233607 |
T |
|
| Q |
407 |
cgaatttggatg--ttaatgcttccaccca |
434 |
Q |
| |
|
|||||||||||| |||||||||| ||||| |
|
|
| T |
36233606 |
cgaatttggatgttttaatgcttctaccca |
36233577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University