View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12549_high_5 (Length: 268)
Name: NF12549_high_5
Description: NF12549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12549_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 37687390 - 37687151
Alignment:
| Q |
21 |
ttaccaaacaactatttctatgctgtgatggattgcttttgtgaggcctcttggcgtcataccaaacagtatgaaatcggttactgtcaacagtgccctg |
120 |
Q |
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| T |
37687390 |
ttaccaaacaactatttctatgctgtgatggattgcttttgtgaggcctcttggcgtcataccaaacagtacgaaatcggttactgtcaacagtgccctg |
37687291 |
T |
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| Q |
121 |
acaaggttcagtggcctactaactttgggcccaaacctcctctatatttcaatgctggcatgtttgtttatgaaccaaacatggctacttaccatgatct |
220 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37687290 |
acaaggttcagtggcctgctaactttgggcccaaacctcctctatatttcaatgctggcatgtttgtttatgaaccaaacatggctacttaccatgatct |
37687191 |
T |
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| Q |
221 |
gcttcaaaaacttcaagtcactaagccaacttcctttgct |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
37687190 |
gcttcaaaaacttcaagtcactaagccaacttcctttgct |
37687151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 37698128 - 37698367
Alignment:
| Q |
21 |
ttaccaaacaactatttctatgctgtgatggattgcttttgtgaggcctcttggcgtcataccaaacagtatgaaatcggttactgtcaacagtgccctg |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37698128 |
ttaccaaacaactatttctatgctgtgatggattgcttttgtgaggcctcttggcgtcataccaaacagtacgaaatcggttactgtcaacagtgccctg |
37698227 |
T |
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| Q |
121 |
acaaggttcagtggcctactaactttgggcccaaacctcctctatatttcaatgctggcatgtttgtttatgaaccaaacatggctacttaccatgatct |
220 |
Q |
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| T |
37698228 |
acaaggttcagtggcctgctaactttgggcccaaacctcctctatatttcaatgctggcatgtttgtttatgaaccaaacatggctacttaccatgatct |
37698327 |
T |
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| Q |
221 |
gcttcaaaaacttcaagtcactaagccaacttcctttgct |
260 |
Q |
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| T |
37698328 |
gcttcaaaaacttcaagtcactaagccaacttcctttgct |
37698367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 21263715 - 21263645
Alignment:
| Q |
190 |
atgaaccaaacatggctacttaccatgatctgcttcaaaaacttcaagtcactaagccaacttcctttgct |
260 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||| |
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| T |
21263715 |
atgaacctaacatggctacttaccatgatcttcttcaaaaactccaagtcaccgaaccaacttcctttgct |
21263645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 24 - 260
Target Start/End: Original strand, 55222066 - 55222302
Alignment:
| Q |
24 |
ccaaacaactatttctatgctgtgatggattgcttttgtgaggcctcttggcgtcataccaaacagtatgaaatcggttactgtcaacagtgccctgaca |
123 |
Q |
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| T |
55222066 |
ccaaataactatttctatgctgtgatggactgttattgtgaggcctcttggcgtcacactaggcaatatcaaattggttactgtcagcaatgtccagaca |
55222165 |
T |
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| Q |
124 |
aggttcagtggcctactaactttgggcccaaacctcctctatatttcaatgctggcatgtttgtttatgaaccaaacatggctacttaccatgatctgct |
223 |
Q |
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||||||| ||||| |||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |
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| T |
55222166 |
aggttcaatggccctctaactttggatccaaaccacctttgtatttcaatgctggcatgtttgtttatgaacctaacatggctacataccatgatctcct |
55222265 |
T |
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| Q |
224 |
tcaaaaacttcaagtcactaagccaacttcctttgct |
260 |
Q |
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| T |
55222266 |
tcaaaaactgcaagtcactgagccaacttcctttgct |
55222302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 45944427 - 45944340
Alignment:
| Q |
102 |
tactgtcaacagtgccctgacaaggttcagtggcctactaactttgggcccaaacctcctctatatttcaatgctggcatgtttgttt |
189 |
Q |
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||||||||||| || ||||| |||||||| ||||| |||| ||||| || || ||||||||||||||||||||||| ||||| |||| |
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| T |
45944427 |
tactgtcaacaatgtcctgataaggttcaatggccatctaattttggacctaagcctcctctatatttcaatgctggaatgttcgttt |
45944340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 20393847 - 20393914
Alignment:
| Q |
193 |
aaccaaacatggctacttaccatgatctgcttcaaaaacttcaagtcactaagccaacttcctttgct |
260 |
Q |
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|||| |||||||||||||| |||||||| ||||||||||| |||||||| | ||||||||||||||| |
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| T |
20393847 |
aacctaacatggctacttagcatgatcttcttcaaaaactccaagtcaccgaaccaacttcctttgct |
20393914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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