View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12549_high_6 (Length: 267)
Name: NF12549_high_6
Description: NF12549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12549_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 38124039 - 38123793
Alignment:
| Q |
13 |
aataacaatatcaatcgttaattaactaattaagtttttgcatatagaaaatgagtaaaagagtaataaacagcttacatcaataagctctcctaaagga |
112 |
Q |
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| T |
38124039 |
aataacaatatcaatcgttaattaactaattaaatttttgcatatagaaaatgagtaaaagagtaataaacagcttacatcaataagctctcctaaagga |
38123940 |
T |
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| Q |
113 |
gcttcatcaccaaaaccctcaacataatcacagtaaccaagcccagatttaacataattaagctcacacattggttctcccacagtagcatagtattcaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38123939 |
gcttcatcaccaaaaccctcaacataatcacagtaaccaagcccagatttaacataattaagctcacacattggttctcccacagtagcatagtattcaa |
38123840 |
T |
|
| Q |
213 |
ttctcgttgcatctgcatccaacgctgttaaccccattacctatgct |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38123839 |
ttctcgttgcatctgcatccaacgctgttaaccccattacccatgct |
38123793 |
T |
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