View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12549_low_9 (Length: 233)

Name: NF12549_low_9
Description: NF12549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12549_low_9
NF12549_low_9
[»] chr5 (7 HSPs)
chr5 (43-220)||(38447471-38447648)
chr5 (125-220)||(26033204-26033299)
chr5 (125-220)||(38180937-38181032)
chr5 (125-220)||(38190099-38190194)
chr5 (125-220)||(38208161-38208256)
chr5 (125-220)||(38217324-38217419)
chr5 (125-220)||(38456297-38456392)
[»] chr4 (1 HSPs)
chr4 (87-220)||(53351281-53351414)
[»] chr6 (1 HSPs)
chr6 (155-217)||(4121652-4121714)
[»] chr1 (2 HSPs)
chr1 (133-220)||(38342754-38342844)
chr1 (133-220)||(38446947-38447037)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 43 - 220
Target Start/End: Complemental strand, 38447648 - 38447471
Alignment:
Q  43 caaccaactttgaaaactgcttatttgagacatcaaagttattttcttgagaatcctcaacttgttggccactggaaccaccattcaactcatcatccag 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38447648 caaccaactttgaaaactgcttatttgagacatcaaagttattttcttgagaatcctcaacttgttggccactggaaccaccattcaactcatcatccag 38447549  T
Q  143 ttccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 220  Q
    |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  38447548 ttccatgttgtcagggaagggtgacaagccacactttttatgttttctctttctcgcattccaaaagttcttgatgtc 38447471  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 26033204 - 26033299
Alignment:
Q  125 attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 220  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| |  |||||| |||||||| ||||||||||||||||||||    
T  26033204 attcagctcatcatccagttccatgttgtcagggaagggtgacaagccacgcctttcaagttttctttttctcgcgttccaaaagttcttgatgtc 26033299  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 38181032 - 38180937
Alignment:
Q  125 attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 220  Q
    |||||||| || |||| ||||||||||| | |||||||||||||||||  |||||| |  |||||| |||||||||||||||||||||||||||||    
T  38181032 attcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtc 38180937  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 38190099 - 38190194
Alignment:
Q  125 attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 220  Q
    |||||||| || |||| ||||||||||| | |||||||||||||||||  |||||| |  |||||| |||||||||||||||||||||||||||||    
T  38190099 attcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtc 38190194  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 38208256 - 38208161
Alignment:
Q  125 attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 220  Q
    |||||||| || |||| ||||||||||| | |||||||||||||||||  |||||| |  |||||| |||||||||||||||||||||||||||||    
T  38208256 attcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtc 38208161  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 38217324 - 38217419
Alignment:
Q  125 attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 220  Q
    |||||||| || |||| ||||||||||| | |||||||||||||||||  |||||| |  |||||| |||||||||||||||||||||||||||||    
T  38217324 attcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtc 38217419  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 38456392 - 38456297
Alignment:
Q  125 attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 220  Q
    |||||||| || |||| ||||||||||| | |||||||||||||||||  |||||| |  |||||| |||||||||||||||||||||||||||||    
T  38456392 attcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtc 38456297  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 53351281 - 53351414
Alignment:
Q  87 tcttgagaatcctcaacttgttggccactggaaccacc---attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttat 183  Q
    ||||| ||||||| ||||||||||| | | |||||||    |||||||||||||| ||||||||| ||| |||| ||||||||||    |||||||| |     
T  53351281 tcttgtgaatccttaacttgttggctatttgaaccacttttattcaactcatcattcagttccatcttgtcaggaaagggtgaca---tacgcttttcaa 53351377  T
Q  184 attttctctttctcgcattccaaaagttcttgatgtc 220  Q
     |||||| ||||| ||||||||||| |||||||||||    
T  53351378 gttttctttttcttgcattccaaaaattcttgatgtc 53351414  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 4121714 - 4121652
Alignment:
Q  155 agggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgat 217  Q
    |||| ||||||| | ||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  4121714 agggtagggtgataggccactctttttatattttctttttcttgcattccaaaagttcttgat 4121652  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 38342844 - 38342754
Alignment:
Q  133 catcatccagttccat---gttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 220  Q
    ||||| ||||||||||   |||| |||||||||||||||||| | |  ||| || |||||| ||||| || ||||||||||||||||||||    
T  38342844 catcaaccagttccatgttgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtc 38342754  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 38447037 - 38446947
Alignment:
Q  133 catcatccagttccat---gttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 220  Q
    ||||| ||||||||||   |||| |||||||||||||||||| | |  ||| || |||||| ||||| || ||||||||||||||||||||    
T  38447037 catcaaccagttccatgttgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtc 38446947  T

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