View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1254_high_12 (Length: 498)
Name: NF1254_high_12
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 98 - 377
Target Start/End: Original strand, 12282956 - 12283235
Alignment:
| Q |
98 |
agcaagaattggcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaat |
197 |
Q |
| |
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|||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12282956 |
agcaagaattggcgtttcggattttctcaatggcgccgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaat |
12283055 |
T |
|
| Q |
198 |
ggagttattcatttcagtgtgagggtggttgtgccggaggaaagatcagttaccgtggcggagaagcaaacggtgatgcatggaaagaattgtggtggcc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12283056 |
ggagttattcatttcagtgtgagggtggttgtgccggaggaaagatcagttaccgtggcggagaagcaaacggtgatgcatggaaagaattgtggtggcc |
12283155 |
T |
|
| Q |
298 |
ggttaactggaatggatgttggtgtcaagaactgtaatggtgttgctattggttttcccttttggtggaattaccctaac |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12283156 |
ggttaactggaatggatgttggtgtcaagaactgtaatggtgttgctattggttttcccttttggtggaattaccctaac |
12283235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 98 - 377
Target Start/End: Original strand, 12267230 - 12267512
Alignment:
| Q |
98 |
agcaagaattggcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaat |
197 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12267230 |
agcaagaattggcgtttcggattttcttaatggcaccgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaat |
12267329 |
T |
|
| Q |
198 |
ggagttattcatttcagtgtgagggtggttgtgccggaggaaagatcagttaccgtggcggagaagcaaacggtgatgcatggaaagaattgtggtggcc |
297 |
Q |
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|
|| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12267330 |
ggggttattcattttagtgtgagggtggttgtgccggaggaaagatcggttaccgtggcggagaagcaaacggtgatgcatggaaagaattgtggtggcc |
12267429 |
T |
|
| Q |
298 |
ggttaactggaatgga---tgttggtgtcaagaactgtaatggtgttgctattggttttcccttttggtggaattaccctaac |
377 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12267430 |
ggttaactggaatggatattgttggtgtcaagaactctaatggtgttgctattggttttcccttttgatggaattaccctaac |
12267512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 99 - 373
Target Start/End: Original strand, 12257137 - 12257414
Alignment:
| Q |
99 |
gcaagaattggcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatg |
198 |
Q |
| |
|
|||||||||| |||| |||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
12257137 |
gcaagaattgctctttcggattttctcaatggcatcgcgccggaaaattgtttgcaaattttgagttataaattgaggaactgggaagggaggcaaaatg |
12257236 |
T |
|
| Q |
199 |
gagttattcatttcagtgtgagggtggttgtgccggaggaaagatcagttaccgtggcg---gagaagcaaacggtgatgcatggaaagaattgtggtgg |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||| | |||||||||| || ||||| || || | |||||||||||| |||||| |
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| T |
12257237 |
gagttattcatttcagtgtgagggtggttgtgccggagaaaacatcggctaccgtggcggttgaaaagcagactgtcgcggatggaaagaattatggtgg |
12257336 |
T |
|
| Q |
296 |
ccggttaactggaatggatgttggtgtcaagaactgtaatggtgttgctattggttttcccttttggtggaattaccc |
373 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
12257337 |
tcggttaactggaatggatgttggtaccaaggactctaatggtgttgctattggtattccgttttggtggaattaccc |
12257414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 99 - 373
Target Start/End: Original strand, 12264529 - 12264806
Alignment:
| Q |
99 |
gcaagaattggcgtttcagattttctcaatggtgctgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatg |
198 |
Q |
| |
|
|||||||||| |||| |||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
12264529 |
gcaagaattgctctttcggattttctcaatggcatcgcgccggaaaattgtttgcaaattttgagttataaattgaggaactgggaagggaggcaaaatg |
12264628 |
T |
|
| Q |
199 |
gagttattcatttcagtgtgagggtggttgtgccggaggaaagatcagttaccgtggcg---gagaagcaaacggtgatgcatggaaagaattgtggtgg |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||| | |||||||||| || ||||| || || | |||||||||||| |||||| |
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| T |
12264629 |
gagttattcatttcagtgtgagggtggttgtgccggagaaaacatcggctaccgtggcggttgaaaagcagactgtcgcggatggaaagaattatggtgg |
12264728 |
T |
|
| Q |
296 |
ccggttaactggaatggatgttggtgtcaagaactgtaatggtgttgctattggttttcccttttggtggaattaccc |
373 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
12264729 |
tcggttaactggaatggatgttggtaccaaggactctaatggtgttgctattggtattccgttttggtggaattaccc |
12264806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 139 - 377
Target Start/End: Original strand, 12271181 - 12271419
Alignment:
| Q |
139 |
cggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggagttattcatttcagtgtgagggtggttgtgccggagga |
238 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |
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| T |
12271181 |
cggaaaattgttcacgaattttgagttataaattgaggaattgggaagggaggcaaaatggagttattcattttggtgtgagggtggttgtgccagagca |
12271280 |
T |
|
| Q |
239 |
aagatcagttaccgtggcggagaagcaaacggtgatgcatggaaagaattgtggtggccggttaactggaatggatgttggtgtcaagaactgtaatggt |
338 |
Q |
| |
|
|||| | ||||||||||||||||||||| ||||| | ||||||||| || ||||| ||||||||||||||| ||||||||| ||||||| ||||||| |
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|
| T |
12271281 |
aagaacggttaccgtggcggagaagcaaccggtggcggatggaaagagttatggtgaccggttaactggaattgatgttggtacgaagaactctaatggt |
12271380 |
T |
|
| Q |
339 |
gttgctattggttttcccttttggtggaattaccctaac |
377 |
Q |
| |
|
| || ||||||| |||| |||||||||||||||||||| |
|
|
| T |
12271381 |
gctgttattggtattcctgtttggtggaattaccctaac |
12271419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 139 - 373
Target Start/End: Original strand, 12287847 - 12288081
Alignment:
| Q |
139 |
cggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggagttattcatttcagtgtgagggtggttgtgccggagga |
238 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| ||| ||||| |
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|
| T |
12287847 |
cggaaaattgttcacgaattttgagttataaattgagagattgggaagggaggcaaaatggagttattcattttggtgtgaaggtggttgcgccagagga |
12287946 |
T |
|
| Q |
239 |
aagatcagttaccgtggcggagaagcaaacggtgatgcatggaaagaattgtggtggccggttaactggaatggatgttggtgtcaagaactgtaatggt |
338 |
Q |
| |
|
|||||| ||||| |||||||| ||| |||| || | |||| |||| || ||||| |||||||||||||| ||||||||| |||||||| |||||| |
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|
| T |
12287947 |
aagatcggttacggtggcggaaaaggaaacactggcggatgggaagagttatggtgatcggttaactggaattgatgttggtaccaagaactctaatgga |
12288046 |
T |
|
| Q |
339 |
gttgctattggttttcccttttggtggaattaccc |
373 |
Q |
| |
|
| || ||||||| |||| ||| ||||||||||||| |
|
|
| T |
12288047 |
ggtgttattggtattccttttaggtggaattaccc |
12288081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 419 - 487
Target Start/End: Original strand, 12283277 - 12283345
Alignment:
| Q |
419 |
gcatgcttgtcaaagattgatgaagtcaatttttgaatgggggcatacaatactattgtactatttcat |
487 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12283277 |
gcatgcttgtcaaagattgataaagtcaatttttgaatgggggcatacaatactattgtactatttcat |
12283345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 140 - 375
Target Start/End: Original strand, 29197904 - 29198139
Alignment:
| Q |
140 |
ggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggagttattcatttcagtgtgagggtggttgtgccggaggaa |
239 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |
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|
| T |
29197904 |
ggaaaattgttcccggattttgagttataaattgaggaactgggaagggaggcaaaatggagttattcattttggtgtgagggtggttatgccggagaaa |
29198003 |
T |
|
| Q |
240 |
agatcagttaccgtggcggagaagcaaacggtgatgcatggaaagaattgtggtggccggttaactggaatggatgttggtgtcaagaactgtaatggtg |
339 |
Q |
| |
|
||||| |||||||||| | | || |||| | || ||||| || ||||| |||||||||||||| ||||||||| |||||||| |||| ||| |
|
|
| T |
29198004 |
agatcggttaccgtggtgaaaaataaaacaacggcagataaaaagagttatggtgatcggttaactggaattgatgttggtaccaagaactctaatagtg |
29198103 |
T |
|
| Q |
340 |
ttgctattggttttcccttttggtggaattacccta |
375 |
Q |
| |
|
||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
29198104 |
ttgttattggtattcctgtttggtggaattacccta |
29198139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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