View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1254_high_14 (Length: 486)

Name: NF1254_high_14
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1254_high_14
NF1254_high_14
[»] scaffold0329 (2 HSPs)
scaffold0329 (6-457)||(18395-18846)
scaffold0329 (333-389)||(18810-18866)
[»] chr6 (12 HSPs)
chr6 (164-336)||(19839760-19839932)
chr6 (241-451)||(30822415-30822628)
chr6 (241-451)||(12592789-12593001)
chr6 (333-457)||(6672501-6672624)
chr6 (164-218)||(12593000-12593054)
chr6 (164-218)||(30822627-30822681)
chr6 (20-140)||(51985-52105)
chr6 (37-105)||(9557369-9557437)
chr6 (335-451)||(30813152-30813271)
chr6 (333-381)||(12592771-12592819)
chr6 (70-117)||(9755698-9755745)
chr6 (333-381)||(30813134-30813182)
[»] chr8 (12 HSPs)
chr8 (241-451)||(27811691-27811901)
chr8 (6-132)||(42032732-42032858)
chr8 (43-140)||(24604828-24604925)
chr8 (39-140)||(34152021-34152122)
chr8 (8-140)||(42241200-42241332)
chr8 (164-218)||(27811900-27811954)
chr8 (38-140)||(7656802-7656904)
chr8 (23-140)||(41927011-41927128)
chr8 (164-233)||(21533919-21533992)
chr8 (37-116)||(2074803-2074882)
chr8 (37-117)||(32073932-32074012)
chr8 (333-381)||(27811673-27811721)
[»] chr7 (6 HSPs)
chr7 (15-132)||(40188165-40188282)
chr7 (6-132)||(46028409-46028535)
chr7 (37-140)||(23176902-23177005)
chr7 (37-101)||(33743502-33743566)
chr7 (29-130)||(12258376-12258477)
chr7 (70-131)||(33888616-33888677)
[»] chr3 (6 HSPs)
chr3 (36-140)||(26982030-26982134)
chr3 (25-128)||(34213151-34213254)
chr3 (37-140)||(4778023-4778126)
chr3 (73-131)||(2833336-2833394)
chr3 (37-105)||(41640850-41640918)
chr3 (70-105)||(1045405-1045440)
[»] chr5 (5 HSPs)
chr5 (6-133)||(41650523-41650649)
chr5 (37-132)||(27639449-27639544)
chr5 (8-130)||(3465274-3465396)
chr5 (45-105)||(33861947-33862007)
chr5 (49-140)||(39774362-39774453)
[»] chr1 (10 HSPs)
chr1 (6-132)||(52372669-52372795)
chr1 (43-130)||(13297595-13297682)
chr1 (28-132)||(25410564-25410668)
chr1 (45-132)||(21926618-21926704)
chr1 (37-140)||(51871194-51871297)
chr1 (43-140)||(44503961-44504058)
chr1 (43-140)||(40799642-40799739)
chr1 (288-330)||(3400655-3400697)
chr1 (46-140)||(9644362-9644456)
chr1 (322-400)||(3399928-3400006)
[»] chr4 (9 HSPs)
chr4 (37-140)||(45068125-45068228)
chr4 (40-116)||(4866794-4866870)
chr4 (14-140)||(23012318-23012444)
chr4 (45-140)||(19469639-19469733)
chr4 (20-116)||(50655058-50655154)
chr4 (37-140)||(24065100-24065203)
chr4 (20-140)||(44616644-44616764)
chr4 (45-132)||(30251406-30251493)
chr4 (67-140)||(48309653-48309726)
[»] chr2 (3 HSPs)
chr2 (37-130)||(43411515-43411608)
chr2 (15-132)||(41074541-41074657)
chr2 (6-131)||(10994432-10994557)
[»] scaffold0001 (3 HSPs)
scaffold0001 (164-233)||(2303-2378)
scaffold0001 (164-233)||(9916-9991)
scaffold0001 (164-233)||(23648-23723)


Alignment Details
Target: scaffold0329 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 6 - 457
Target Start/End: Original strand, 18395 - 18846
Alignment:
Q  6 caccacagaaccccaccgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaa 105  Q
    ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||    
T  18395 caccacaaaaccctaccgctgccaacacagaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagcccagaatcactttcaa 18494  T
Q  106 actatgagtttcgttctatccaccacatgctcctcccactcatgctcctcccgatgctctatcccaaattaaaaccaatggtacccaattctcacttctc 205  Q
    ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  18495 actatgagtttcgctctatccaccacatgcttcttccactcatgctcctcccgatgctctatcctaaattaaaaccaacggtacccaattctcacttctc 18594  T
Q  206 aaatgagttatttttcaccaattgtcctcttaatgttgactcttgcttatatgcttatatgtgcaactgtgtaagctctgtcatcaatttttataaaaat 305  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18595 aaatgagttatttttcaccaattgtcctgttaatgttgactcttgcttatatgcttctatgtgcaactgtgtaagctctgtcatcaatttttataaaaat 18694  T
Q  306 ctcaattcattcttatgtttttgtttaaaaatctcagtttctgttaatgttgctagctgctataacagagcaacattagcttttactttaaggtgatagt 405  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  18695 ctcaattcattcatatgtttttgtttaaaaatctcagtttctgttaatgttgctagctgctatagcagagcaacattagcttttcctttaaggtgatagt 18794  T
Q  406 attgttttctgatttaaaatctcaatttatgttattgttgctagctcctgta 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18795 attgttttctgatttaaaatctcaatttatgttattgttgctagctcctgta 18846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 18810 - 18866
Alignment:
Q  333 aaaatctcagtttctgttaatgttgctagctgctataacagagcaacattagctttt 389  Q
    ||||||||| ||| ||||| ||||||||||| || || |||||||||||||||||||    
T  18810 aaaatctcaatttatgttattgttgctagctcctgtagcagagcaacattagctttt 18866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 164 - 336
Target Start/End: Original strand, 19839760 - 19839932
Alignment:
Q  164 ctatcccaaattaaaaccaatggtacccaattctcacttctcaaatgagttatttttcaccaattgtcctcttaatgttgactcttgcttatatgcttat 263  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |    
T  19839760 ctatcccaaatttaaaccaacggtacccaattctcacttcttaaatgagttatttttcaccaattgtcctgttaatgtttactcttgcttatatgcttct 19839859  T
Q  264 atgtgcaactgtgtaagctctgtcatcaatttttataaaaatctcaattcattcttatgtttttgtttaaaaa 336  Q
     ||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  19839860 ttgtgcaactatgtaaggtctgtcatcaatttttataaaaatctcaattcattcctatgtttttgtataaaaa 19839932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 241 - 451
Target Start/End: Complemental strand, 30822628 - 30822415
Alignment:
Q  241 ttgactcttgcttatatgcttatatgtgcaactgtgtaagctctgtcatcaatttttataaaaatctcaattcattcttatgtttttgtttaaaaatctc 340  Q
    |||||| |||||||| ||||| | ||||||| ||||||    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30822628 ttgactgttgcttatgtgcttgtctgtgcaattgtgtagtgcctgtcatcaatttttataaaaatctcaattcattcctatgtttttgtttaaaaatctc 30822529  T
Q  341 agtttctgttaatgttgctagctgctataacagagcaacattagcttttactt--taaggtgatagtattgttttct-gatttaaaatctcaatttatgt 437  Q
    | ||||||||||||||||||| |||| || |||  ||||||| |||||| |||  ||||||| |||||||||||| |  ||||||||| | ||||| |||    
T  30822528 aatttctgttaatgttgctaggtgctgtagcagcacaacattggctttttctttataaggtgttagtattgttttttctatttaaaattttaatttctgt 30822429  T
Q  438 tattgttgctagct 451  Q
    || |||||||||||    
T  30822428 taatgttgctagct 30822415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 241 - 451
Target Start/End: Complemental strand, 12593001 - 12592789
Alignment:
Q  241 ttgactcttgcttatatgcttatatgtgcaactgtgtaagctctgtcatcaatttttataaaaatctcaattcattcttatgtttttgtttaaaaatctc 340  Q
    |||||| ||| |||| ||||| | |||||||||| |||    |||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  12593001 ttgactgttgtttatgtgcttgtctgtgcaactgagtagcacctgtcatcaatttttatataaatgtcaattcattcctatgtttttgtttaaaaatctc 12592902  T
Q  341 agtttctgttaatgttgctagctgctataacagagcaacattagcttttactttaaggtgatagtattgtttt--ctgatttaaaatctcaatttatgtt 438  Q
    | |||  |||| |||||||||||||| || |||||||||||| |||||| |||||||||| || |||||||||   | ||||||||||||||||| ||||    
T  12592901 aattttcgttactgttgctagctgctgtagcagagcaacattggcttttgctttaaggtgttattattgtttttatttatttaaaatctcaatttctgtt 12592802  T
Q  439 attgttgctagct 451  Q
    | |||||||||||    
T  12592801 aatgttgctagct 12592789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 333 - 457
Target Start/End: Original strand, 6672501 - 6672624
Alignment:
Q  333 aaaatctcagtttctgttaatgttgctagctgctataacagagcaacattagcttttactttaaggtgatagtattgttttctgatttaaaatctcaatt 432  Q
    ||||||||| ||||||||  |||| ||||||| |||  ||||||||||||| ||||| |||||||||| ||||||||||||||||||| |||||| ||||    
T  6672501 aaaatctcaatttctgttcttgttactagctgttatg-cagagcaacattaactttttctttaaggtgttagtattgttttctgatttcaaatcttaatt 6672599  T
Q  433 tatgttattgttgctagctcctgta 457  Q
    | ||||| |||||||| || |||||    
T  6672600 tttgttaatgttgctatctgctgta 6672624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 12593054 - 12593000
Alignment:
Q  164 ctatcccaaattaaaaccaatggtacccaattctcacttctcaaatgagttattt 218  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  12593054 ctatcccaaatttaaaccaacggtacccaattctcacttctcaaatgagttattt 12593000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 30822681 - 30822627
Alignment:
Q  164 ctatcccaaattaaaaccaatggtacccaattctcacttctcaaatgagttattt 218  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  30822681 ctatcccaaatttaaaccaacggtacccaattctcacttctcaaatgagttattt 30822627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 52105 - 51985
Alignment:
Q  20 accgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgt 119  Q
    |||||||||||||||  |   ||||||||||||||||||   ||||||| ||||||||| | |||||||||| ||||||||||||| ||| |||||| |     
T  52105 accgctgccaacacaggatatgttgcacctcccactcatataaagtgcaagaactagcaagacacttagccaggaaccacttccaagctaagagtttagc 52006  T
Q  120 tctatccaccacatgctcctc 140  Q
    || |||||||| | |||||||    
T  52005 tcgatccaccataggctcctc 51985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 9557369 - 9557437
Alignment:
Q  37 acgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaa 105  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| ||||||| || ||| |||||||||    
T  9557369 acgggctgcacctcccactcatgataagtgcaggagctagcaggacacttagtcaggaatcacttccaa 9557437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 451
Target Start/End: Complemental strand, 30813271 - 30813152
Alignment:
Q  335 aatctcagtttctgttaatgttgctagctgctataacagagcaacattagcttttactt--taaggtgatagtattgtttt-ctgatttaaaatctcaat 431  Q
    ||||||| |||| |||||||||||||| |||| || |||  ||||||| |||||| |||  ||||||| |||||||||||| |  ||||||||| |||||    
T  30813271 aatctcaatttccgttaatgttgctaggtgctgtagcagcacaacattggcttttgcttcataaggtgttagtattgtttttcctatttaaaatttcaat 30813172  T
Q  432 ttatgttattgttgctagct 451  Q
    || ||||| |||||||||||    
T  30813171 ttctgttaatgttgctagct 30813152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 12592819 - 12592771
Alignment:
Q  333 aaaatctcagtttctgttaatgttgctagctgctataacagagcaacat 381  Q
    ||||||||| |||||||||||||||||||||| | || |||||||||||    
T  12592819 aaaatctcaatttctgttaatgttgctagctgatgtagcagagcaacat 12592771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 9755698 - 9755745
Alignment:
Q  70 gaactagcagggcacttagccaagaaccacttccaaactatgagtttc 117  Q
    |||||||||||||||||||||   |||||||||||||||| |||||||    
T  9755698 gaactagcagggcacttagcccgaaaccacttccaaactaagagtttc 9755745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 30813182 - 30813134
Alignment:
Q  333 aaaatctcagtttctgttaatgttgctagctgctataacagagcaacat 381  Q
    ||||| ||| |||||||||||||||||||||| | || |||||||||||    
T  30813182 aaaatttcaatttctgttaatgttgctagctgatgtagcagagcaacat 30813134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 241 - 451
Target Start/End: Complemental strand, 27811901 - 27811691
Alignment:
Q  241 ttgactcttgcttatatgcttatatgtgcaactgtgtaagctctgtcatcaatttttataaaaatctcaattcattcttatgtttttgtttaaaaatctc 340  Q
    |||||| |||||||| ||||| | ||||||||||||||    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27811901 ttgactgttgcttatgtgcttgtttgtgcaactgtgtagtacctgtcatcaatttttataaaaatctcaattcattcctatgtttttgtttaaaaatctc 27811802  T
Q  341 agtttctgttaatgttgctagctgctataacagagcaacattagcttttactttaaggtgatagtattgttttctgatttaaaatctcaatttatgttat 440  Q
    | |||| ||||||||| |||| |||| || ||| |||||||| |||||| |||||||||| |||||||||||| | ||||||||| ||||||| |||||     
T  27811801 aatttccgttaatgtttctaggtgctgtagcagcgcaacattggcttttgctttaaggtgttagtattgtttttttatttaaaatttcaatttctgttaa 27811702  T
Q  441 tgttgctagct 451  Q
    |||||||||||    
T  27811701 tgttgctagct 27811691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 42032858 - 42032732
Alignment:
Q  6 caccacagaaccccaccgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaa 105  Q
    |||||||  |||| |||| |||||||| |  |||||||||||||||||||||| | | | ||||||| |||||||||||||||||| |||||||||||||    
T  42032858 caccacaacaccctaccgttgccaacaaaggacgggttgcacctcccactcataaaaggagcaggaagtagcagggcacttagccaggaaccacttccaa 42032759  T
Q  106 actatgagtttcgttctatccaccaca 132  Q
     ||| |||||||| ||||| |||||||    
T  42032758 gctaagagtttcgctctattcaccaca 42032732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 24604925 - 24604828
Alignment:
Q  43 tgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgctcctc 140  Q
    |||||||||||||||||||||| | |  |||||||||| |||||||||||||||||||| ||| ||| |||||||| ||||||||||||  |||||||    
T  24604925 tgcacctcccactcatgataagagaaaaaactagcaggccacttagccaagaaccactttcaatctaagagtttcgctctatccaccaccagctcctc 24604828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 34152021 - 34152122
Alignment:
Q  39 gggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgctcc 138  Q
    |||||||||||||||||||||| |||||||||||||   ||||| |||||||| ||||||||||||| ||| |||||| | ||||||||| ||| |||||    
T  34152021 gggttgcacctcccactcatgaaaagtgcaggaactgctagggcgcttagccaggaaccacttccaagctaagagtttagctctatccacaacaggctcc 34152120  T
Q  139 tc 140  Q
    ||    
T  34152121 tc 34152122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 42241200 - 42241332
Alignment:
Q  8 ccacagaaccccaccgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaac 107  Q
    |||| |||||| | || ||||| ||||  ||||||||||||||||||||| | |||||||||||||||| || || ||| |||| ||||||||||||| |    
T  42241200 ccactgaaccctatcgatgccagcacaggacgggttgcacctcccactcaaggtaagtgcaggaactagtagagcgcttcgccaggaaccacttccaagc 42241299  T
Q  108 tatgagtttcgttctatccaccacatgctcctc 140  Q
    || |||||||| | ||||||||| | |||||||    
T  42241300 taagagtttcgctttatccaccaaaggctcctc 42241332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 27811954 - 27811900
Alignment:
Q  164 ctatcccaaattaaaaccaatggtacccaattctcacttctcaaatgagttattt 218  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27811954 ctatcccaaatttaaaccaatggtacccaattctcacttctcaaatgagttattt 27811900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 7656802 - 7656904
Alignment:
Q  38 cgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgctc 137  Q
    ||||||||||||| |||| |||||||||||| ||| ||| ||| |||||||  | |||||||||||||| || |||||||  ||||||||||||| ||||    
T  7656802 cgggttgcacctctcactaatgataagtgcaagaattagtaggacacttagttaggaaccacttccaaattaagagtttcactctatccaccacaggctc 7656901  T
Q  138 ctc 140  Q
    |||    
T  7656902 ctc 7656904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 41927128 - 41927011
Alignment:
Q  23 gctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttct 122  Q
    ||||||||||||  | ||| |||| |||||||||||   ||  ||||||| | ||| |||||||||||| ||||||||||||| ||| ||| |||| |||    
T  41927128 gctgccaacacaggaaggggtgcatctcccactcatagaaaaagcaggaatttgcacggcacttagccaggaaccacttccaagctaagagattcgctct 41927029  T
Q  123 atccaccacatgctcctc 140  Q
    |||||||||| |||||||    
T  41927028 atccaccacaggctcctc 41927011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 21533919 - 21533992
Alignment:
Q  164 ctatcccaaattaaaaccaatggtacccaattctcacttctcaa----atgagttatttttcaccaattgtcct 233  Q
    |||||||||||| | |||||||||||| |||| |||||||||||    ||||||||||||||||||||||||||    
T  21533919 ctatcccaaatttagaccaatggtaccaaattttcacttctcaaatatatgagttatttttcaccaattgtcct 21533992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 2074803 - 2074882
Alignment:
Q  37 acgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagttt 116  Q
    ||||||||||||||||||||||    ||  ||||||||||||||||||||||||  |||| ||||| |||||| ||||||    
T  2074803 acgggttgcacctcccactcatagagagaacaggaactagcagggcacttagcctggaacaacttcaaaactaagagttt 2074882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 32073932 - 32074012
Alignment:
Q  37 acgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttc 117  Q
    ||||| ||| |||||||||||| | | | ||||||||||| ||| ||||||||||  || ||||||||||||| |||||||    
T  32073932 acgggctgcgcctcccactcataaaaggagcaggaactagtaggacacttagccagaaatcacttccaaactaagagtttc 32074012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 27811721 - 27811673
Alignment:
Q  333 aaaatctcagtttctgttaatgttgctagctgctataacagagcaacat 381  Q
    ||||| ||| |||||||||||||||||||||| | || |||||||||||    
T  27811721 aaaatttcaatttctgttaatgttgctagctgatgtagcagagcaacat 27811673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 40188165 - 40188282
Alignment:
Q  15 accccaccgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagt 114  Q
    |||| |||||||||||||||| ||| | ||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||    
T  40188165 accctaccgctgccaacacaagacgagctgcacctcctactcatgataagtgcaagaactagcagggcacttaggcaagaaccacttccaagctatgagt 40188264  T
Q  115 ttcgttctatccaccaca 132  Q
    || | | |||||||||||    
T  40188265 tttgctttatccaccaca 40188282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 46028409 - 46028535
Alignment:
Q  6 caccacagaaccccaccgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaa 105  Q
    |||||||  |||| |||| |||||||| | |||||| ||||||||||||| || | | | | || |||||||||| |||||||||| |||||||||||||    
T  46028409 caccacaacaccctaccgttgccaacaaagaacgggctgcacctcccacttataaaaggagtagaaactagcaggacacttagccaggaaccacttccaa 46028508  T
Q  106 actatgagtttcgttctatccaccaca 132  Q
     ||| |||||||| |||||||||||||    
T  46028509 gctaagagtttcgctctatccaccaca 46028535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 23176902 - 23177005
Alignment:
Q  37 acgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgct 136  Q
    ||||| ||||||||| |||||||||||||||| ||||||||| | ||||| || | ||||| ||||||| ||| |||||||  ||||| ||||||| |||    
T  23176902 acgggctgcacctccaactcatgataagtgcatgaactagcatgacacttggcaaggaaccgcttccaagctaagagtttcactctatacaccacaggct 23177001  T
Q  137 cctc 140  Q
    ||||    
T  23177002 cctc 23177005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 33743566 - 33743502
Alignment:
Q  37 acgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccactt 101  Q
    ||||||||||||||||||||||    ||  |||| ||||||||||||||||||||||||||||||    
T  33743566 acgggttgcacctcccactcatagagagaacagggactagcagggcacttagccaagaaccactt 33743502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 12258477 - 12258376
Alignment:
Q  29 aacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccac 128  Q
    |||||| |||| | ||||||||||||||||    || ||||| ||| ||||| |||||||||| ||||||||| ||| ||| ||||||   |||||||||    
T  12258477 aacacagaacgagctgcacctcccactcatagagagagcagggactggcaggacacttagccaggaaccactttcaagctaagagtttaactctatccac 12258378  T
Q  129 ca 130  Q
    ||    
T  12258377 ca 12258376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 33888677 - 33888616
Alignment:
Q  70 gaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccac 131  Q
    |||||||||||||||||||||   |||||||||||| ||| ||||| |  ||||||||||||    
T  33888677 gaactagcagggcacttagcccgaaaccacttccaatctaagagttccactctatccaccac 33888616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 26982030 - 26982134
Alignment:
Q  36 aacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgc 135  Q
    |||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||   ||||||||||||| ||    
T  26982030 aacgggctgaacctcccactcatgataggtgcaggaacttgcagggcacttagccaagaaccacttccaagctaagagttttactctatccaccacaggc 26982129  T
Q  136 tcctc 140  Q
    |||||    
T  26982130 tcctc 26982134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 34213254 - 34213151
Alignment:
Q  25 tgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctat 124  Q
    ||||||||||  ||||| |||||||| ||||| ||||||||||| ||||||||| |||||||||||| ||||||||||||| ||| |||||||  |||||    
T  34213254 tgccaacacaggacgggctgcacctcacactcgtgataagtgcatgaactagcatggcacttagccatgaaccacttccaagctaagagtttcactctat 34213155  T
Q  125 ccac 128  Q
    ||||    
T  34213154 ccac 34213151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 4778126 - 4778023
Alignment:
Q  37 acgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgct 136  Q
    ||||| ||||||||||||||||    || ||||| ||||||||||||| |||||  ||||||||||||||||| ||||||   ||||||||||||| |||    
T  4778126 acgggctgcacctcccactcatagagagagcagggactagcagggcacctagcctggaaccacttccaaactaagagtttaactctatccaccacaggct 4778027  T
Q  137 cctc 140  Q
    ||||    
T  4778026 cctc 4778023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 2833336 - 2833394
Alignment:
Q  73 ctagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccac 131  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||||  |||||| |||||    
T  2833336 ctagcagggcacttagccatgaaccacttccaagctaagagtttcactctatctaccac 2833394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 41640918 - 41640850
Alignment:
Q  37 acgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaa 105  Q
    ||||| ||||||||||||||||    || |||||||||||||||||||||||||   ||||||||||||    
T  41640918 acgggctgcacctcccactcatagggagagcaggaactagcagggcacttagcccgaaaccacttccaa 41640850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 1045405 - 1045440
Alignment:
Q  70 gaactagcagggcacttagccaagaaccacttccaa 105  Q
    |||||||||||||||||||||| |||||||||||||    
T  1045405 gaactagcagggcacttagccaggaaccacttccaa 1045440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 41650649 - 41650523
Alignment:
Q  6 caccacagaaccccaccgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaa 105  Q
    ||||||| ||||| || |||||||||| |  |||||||||||| || ||||||| ||||||||||| ||||||| ||||||||||| |||||||||||||    
T  41650649 caccacaaaaccctactgctgccaacaaaggacgggttgcaccacc-actcatggtaagtgcaggagctagcagagcacttagccaggaaccacttccaa 41650551  T
Q  106 actatgagtttcgttctatccaccacat 133  Q
     ||| |||||||| ||||||||||||||    
T  41650550 gctaagagtttcgctctatccaccacat 41650523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 27639449 - 27639544
Alignment:
Q  37 acgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccaca 132  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| || ||||||| ||||||||||||| ||| || ||| | |||||||||||||    
T  27639449 acgggttgcacctcctactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaattttgctctatccaccaca 27639544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 3465274 - 3465396
Alignment:
Q  8 ccacagaaccccaccgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaac 107  Q
    ||||||||||| || | ||||| ||||  | ||||||||||||||||||||| |||||||||||||||| ||  | ||| |||||||| ||||||||| |    
T  3465274 ccacagaaccctactgatgccagcacaggatgggttgcacctcccactcatggtaagtgcaggaactagtagaacgcttcgccaagaaacacttccaagc 3465373  T
Q  108 tatgagtttcgttctatccacca 130  Q
    || |||||||| |||||||||||    
T  3465374 taagagtttcgctctatccacca 3465396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 33862007 - 33861947
Alignment:
Q  45 cacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaa 105  Q
    |||||||||||||||| ||| |||||||||| ||||||||||||||  || ||||||||||    
T  33862007 cacctcccactcatgaaaagagcaggaactaccagggcacttagccgggagccacttccaa 33861947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 39774453 - 39774362
Alignment:
Q  49 tcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgctcctc 140  Q
    |||||||| ||||||||  ||||| ||||| | |||||| |||| |||||||| |||| || |||||| | ||||||||||||  |||||||    
T  39774453 tcccactcttgataagtttaggaagtagcatgacacttaaccaaaaaccactttcaaattaagagttttgctctatccaccactagctcctc 39774362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 52372795 - 52372669
Alignment:
Q  6 caccacagaaccccaccgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaa 105  Q
    |||||||  |||| ||||||||||||| |  | |||||||||||||||||||| | ||| ||||||||||||||||||| |||||| |||||||||| ||    
T  52372795 caccacaacaccctaccgctgccaacaaaggatgggttgcacctcccactcataaaaagagcaggaactagcagggcacctagccaggaaccacttctaa 52372696  T
Q  106 actatgagtttcgttctatccaccaca 132  Q
     ||| |||||||| |||||||||||||    
T  52372695 gctaagagtttcgctctatccaccaca 52372669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 13297682 - 13297595
Alignment:
Q  43 tgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccacca 130  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||| || ||| ||| |||||||  |||||||||||    
T  13297682 tgcacctcccactcatgataagtgcaggaactagcaggacacttagccatgaaccaatttcaagctaagagtttcactctatccacca 13297595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 25410564 - 25410668
Alignment:
Q  28 caacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatcca 127  Q
    |||||||| ||||| ||||||||||||||||   ||| ||||||||||||| || ||||||||| ||||||||||||| ||| |||||||  ||||||||    
T  25410564 caacacaagacgggctgcacctcccactcatagaaagagcaggaactagcaaggtacttagccaggaaccacttccaagctaagagtttcactctatcca 25410663  T
Q  128 ccaca 132  Q
     ||||    
T  25410664 tcaca 25410668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 21926704 - 21926618
Alignment:
Q  45 cacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccaca 132  Q
    ||||||||||||||||||||  || ||||||||||||||||||||| |||||||||||||  ||| |||||||  |||||||||||||    
T  21926704 cacctcccactcatgataagaacatgaactagcagggcacttagcc-agaaccacttccaggctaagagtttcactctatccaccaca 21926618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 51871297 - 51871194
Alignment:
Q  37 acgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgct 136  Q
    ||||| ||||||||||||||||    ||  |||||||||||||||||||||| || ||||||||||||| ||| ||||||  |||||||||||||  |||    
T  51871297 acgggctgcacctcccactcatagagagaacaggaactagcagggcacttagtcaggaaccacttccaagctaagagtttaattctatccaccactggct 51871198  T
Q  137 cctc 140  Q
    ||||    
T  51871197 cctc 51871194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 44503961 - 44504058
Alignment:
Q  43 tgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgctcctc 140  Q
    |||||||||||||||||| ||| |||||||||| || | ||||||| || ||||||||||||| ||| ||| |||  | ||||||||||| |||||||    
T  44503961 tgcacctcccactcatgaaaagagcaggaactaccacgacacttagtcatgaaccacttccaagctaagagcttcactttatccaccacaggctcctc 44504058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 40799739 - 40799642
Alignment:
Q  43 tgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgctcctc 140  Q
    |||||||||||||||||| ||| ||| |||||||||  ||||||||| | |||| |||| ||| | | |||||||  ||||||||||||| |||||||    
T  40799739 tgcacctcccactcatgaaaagagcaagaactagcaatgcacttagctaggaacaactttcaagccaagagtttcactctatccaccacaggctcctc 40799642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 3400697 - 3400655
Alignment:
Q  288 atcaatttttataaaaatctcaattcattcttatgtttttgtt 330  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  3400697 atcaatttttataaaaatttcaattcattcctatgtttttgtt 3400655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 9644456 - 9644362
Alignment:
Q  46 acctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgctcctc 140  Q
    |||||||| |||||| | | ||| ||||||| ||| |||||||| | ||||||||||||| | | |||||||| ||||||||||| | |||||||    
T  9644456 acctcccattcatgaaaggagcaagaactagtaggacacttagctaggaaccacttccaacccaagagtttcgctctatccaccataggctcctc 9644362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 400
Target Start/End: Complemental strand, 3400006 - 3399928
Alignment:
Q  322 gtttttgtttaaaaatctcagtttctgttaatgttgctagctgctataacagagcaacattagcttttactttaaggtg 400  Q
    |||||||| ||||||||||| ||| | |||| ||||||||||| | || |||||| |||||| ||||| |||| |||||    
T  3400006 gtttttgtataaaaatctcaattttttttaacgttgctagctgttgtagcagagcgacattaacttttgctttgaggtg 3399928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 45068125 - 45068228
Alignment:
Q  37 acgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgct 136  Q
    |||||||||||||||| ||||||||||||| |||||||  ||||||||||||||| ||||||||||||| ||| |||||| | ||||||||| ||| |||    
T  45068125 acgggttgcacctccccctcatgataagtgtaggaactgccagggcacttagccaggaaccacttccaagctaagagtttagctctatccactacaggct 45068224  T
Q  137 cctc 140  Q
    ||||    
T  45068225 cctc 45068228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 4866870 - 4866794
Alignment:
Q  40 ggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagttt 116  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||||||||| ||| ||||||    
T  4866870 ggttgcacctcccactcatgataagtgcaaggactagcaaggcacttagccaggaaccacttccaagctaagagttt 4866794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 23012318 - 23012444
Alignment:
Q  14 aaccccaccgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgag 113  Q
    ||||| |||| || |||||||  ||| | ||||||||||| ||||||||||||||| ||||||||   |||||||||| |||||| |||||||||| |||    
T  23012318 aaccctaccgatgtcaacacaggacgtgctgcacctcccattcatgataagtgcagaaactagcacaacacttagccatgaaccaattccaaactaagag 23012417  T
Q  114 tttcgttctatccaccacatgctcctc 140  Q
    ||||  ||||||||||||  |||||||    
T  23012418 tttcactctatccaccacgggctcctc 23012444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 19469733 - 19469639
Alignment:
Q  45 cacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgctcctc 140  Q
    |||||||||||||||||||||||||||||||||| | |||||| | | ||||||||||||| ||| ||  || | |||||||||||||||||||||    
T  19469733 cacctcccactcatgataagtgcaggaactagca-gacacttaactaggaaccacttccaagctaagaactttgctctatccaccacatgctcctc 19469639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 50655058 - 50655154
Alignment:
Q  20 accgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagttt 116  Q
    ||||||||||||| |  || ||||||||||||||||||||  ||  ||| ||||||||||| |||||||||| ||||||||||||| ||| ||||||    
T  50655058 accgctgccaacaaaggacaggttgcacctcccactcatggaaaaagcaagaactagcaggacacttagccaggaaccacttccaagctaagagttt 50655154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 24065100 - 24065203
Alignment:
Q  37 acgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgct 136  Q
    |||||||| |||||||| |||| ||||   ||||||||||||||| ||||||||| ||||||||||||   || |||||||  ||||||||||||| |||    
T  24065100 acgggttgtacctcccattcataataacaacaggaactagcagggtacttagccatgaaccacttccaggttaagagtttcactctatccaccacaggct 24065199  T
Q  137 cctc 140  Q
    ||||    
T  24065200 cctc 24065203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 44616644 - 44616764
Alignment:
Q  20 accgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgt 119  Q
    |||||| || |||||  ||||||||||||||||||||||  |||||||| ||| ||||| ||| |||||||| || |||||| ||| ||| ||| |||      
T  44616644 accgcttcccacacaggacgggttgcacctcccactcatcgtaagtgcaagaattagcaaggcccttagccatgagccacttacaagctaagagcttctc 44616743  T
Q  120 tctatccaccacatgctcctc 140  Q
    ||||||| ||| | |||||||    
T  44616744 tctatccgccataggctcctc 44616764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 30251406 - 30251493
Alignment:
Q  45 cacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccaca 132  Q
    ||||||||||||||||  || ||| |||||  ||||||||||||||| ||||||||| ||| | | |||||||  |||||||||||||    
T  30251406 cacctcccactcatgaacagagcaagaacttccagggcacttagccaggaaccactttcaagccaagagtttcactctatccaccaca 30251493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 48309653 - 48309726
Alignment:
Q  67 caggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccaccacatgctcctc 140  Q
    ||||||||||||||  ||||||||  |||| |||||||| ||| |||||||  ||||||||||||  |||||||    
T  48309653 caggaactagcaggaaacttagcccggaacgacttccaagctaagagtttcactctatccaccactggctcctc 48309726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 43411608 - 43411515
Alignment:
Q  37 acgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagtttcgttctatccacca 130  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||| ||| ||| |||||||| |||||||||||    
T  43411608 acgggctgcacctcccactcatgataagtgcaggagctagcaggacacttagccaggaaacactttcaagctaagagtttcgctctatccacca 43411515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 41074541 - 41074657
Alignment:
Q  15 accccaccgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaaactatgagt 114  Q
    |||| |||| ||||| |||| |||||| ||||||| |||||||||| ||||| |||| ||||||||||||||||||| ||||||||| ||| ||| ||||    
T  41074541 accctaccgatgccagcacagaacgggctgcaccttccactcatgaaaagtgaagga-ctagcagggcacttagccaggaaccactttcaagctaagagt 41074639  T
Q  115 ttcgttctatccaccaca 132  Q
    |||| | | |||||||||    
T  41074640 ttcgctttgtccaccaca 41074657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 10994557 - 10994432
Alignment:
Q  6 caccacagaaccccaccgctgccaacacaaaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagccaagaaccacttccaa 105  Q
    ||||||| ||||| |||| | | ||||||| ||||| ||||||||||||||||    ||  | ||||||||||||||||||||||| |||||||||||||    
T  10994557 caccacaaaaccctaccgattcaaacacaagacgggctgcacctcccactcatagagagaacgggaactagcagggcacttagccaggaaccacttccaa 10994458  T
Q  106 actatgagtttcgttctatccaccac 131  Q
     ||| ||||||   ||||||||||||    
T  10994457 gctaagagtttaactctatccaccac 10994432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 2303 - 2378
Alignment:
Q  164 ctatcccaaattaaaaccaatggtacccaattctcacttctcaa------atgagttatttttcaccaattgtcct 233  Q
    |||||||||||| |||||||||||||| ||||||||||||||||      ||||||||||||||||||||||||||    
T  2303 ctatcccaaatttaaaccaatggtaccaaattctcacttctcaaatacacatgagttatttttcaccaattgtcct 2378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 9916 - 9991
Alignment:
Q  164 ctatcccaaattaaaaccaatggtacccaattctcacttctcaa------atgagttatttttcaccaattgtcct 233  Q
    |||||||||||| |||||||||||||| ||||||||||||||||      ||||||||||||||||||||||||||    
T  9916 ctatcccaaatttaaaccaatggtaccaaattctcacttctcaaatacacatgagttatttttcaccaattgtcct 9991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 23648 - 23723
Alignment:
Q  164 ctatcccaaattaaaaccaatggtacccaattctcacttctcaa------atgagttatttttcaccaattgtcct 233  Q
    |||||||||||| |||||||||||||| ||||||||||||||||      ||||||||||||||||||||||||||    
T  23648 ctatcccaaatttaaaccaatggtaccaaattctcacttctcaaatacacatgagttatttttcaccaattgtcct 23723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University