View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_high_15 (Length: 477)
Name: NF1254_high_15
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Original strand, 50220767 - 50221192
Alignment:
| Q |
16 |
atcacttttagattggataaaatgcttaattttagtttgattgatataaaatgcttcaattaaaagtatgaaaatatttggctatgattnnnnnnnnnnn |
115 |
Q |
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| T |
50220767 |
atcacttttagattggataaaatgcttaattttagtttgattgatataaaatgcttcaattaaaagtatgaaaatatttggttatgattaaaaaaaaaaa |
50220866 |
T |
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| Q |
116 |
nnnngtatttctattgaagacagttgggcgtgtgagtgaggtggcaagaactccgtagtttgattaaatctcataaaattctgttggctaccaaagatca |
215 |
Q |
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| T |
50220867 |
aa--gtatttctattgaagacagttgggcgtgtgagtgaggtggcaagaactccgtagtttgattaaatctcataaaattctgttggctaccaaagatca |
50220964 |
T |
|
| Q |
216 |
attatgagttgcatttgcatggctttattggccatgaattaaggtttatgtaagaaattaatcgtcctataatcattgtgatgaacgaatgattcattca |
315 |
Q |
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| T |
50220965 |
attatgagttgcatttgcatggctttattggccatgaattaaggtttatgtaagaaattaatcgtcctataatcgttgtgatgaacgaatgattcattca |
50221064 |
T |
|
| Q |
316 |
tgatgatagggttaagaaaacacaaattaagaagacctgcattggtcattgcattggcttctgtggcgtgctttgttatgattataaccgcttacattta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50221065 |
tgatgatagggttaagaaaacacaaattaagaagacctgcattggtcattgcattggcttctgtggcgtgctttgttatgattataaccgcttacattta |
50221164 |
T |
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| Q |
416 |
tagtacaccaacgagaacaggttccgat |
443 |
Q |
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| T |
50221165 |
tagtacaccaacgagaacaggttccgat |
50221192 |
T |
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