View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1254_high_17 (Length: 471)
Name: NF1254_high_17
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 251 - 442
Target Start/End: Original strand, 41653155 - 41653346
Alignment:
| Q |
251 |
ggtaataattagctgaaaacaatgatttagccaattaattaattaccaacattcgtacaagttaatctccgcacgaagcctaaaataaacttcaccttca |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41653155 |
ggtaataattagctgaaaacaatgatttagccaattaattaattaccaacattcgtacaagttaatctccgcacgaagcctaaaataaacttcaccttca |
41653254 |
T |
|
| Q |
351 |
aatgaatctgttgaaagagtagccactcccctagtcatgaagaaatcaccagtcccaccaattaccgaaatgtccctagtcttattcatcaa |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41653255 |
aatgaatctgttgaaagagtagccactcccctagtcatgaagaaatcaccagtcccaccaattaccgaaatgtccctagtcttattcatcaa |
41653346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 41652901 - 41653074
Alignment:
| Q |
15 |
gagggcaattttaataacgagtaaacttcattttgaacctaattccaaatttccattaagaaacatgaaataaacgctgaaaaaatatccaagaatttaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
41652901 |
gagggcaattttaataacgagtaaacttcattttgaacctaattccaaatttccattaagaaacatgaaatgaacgcggataaaatatccaagaatttaa |
41653000 |
T |
|
| Q |
115 |
ttaacttcaccaaacaaaacttcacacataatgttaaatgcgaagtattattcatttttgaataaaggctccaca |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
41653001 |
ttaacttcaccaaacaaaacttcacacataatgttaaatgcgaagcattattcaattttgaat-aaggctccaca |
41653074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University