View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_high_18 (Length: 466)
Name: NF1254_high_18
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 12 - 437
Target Start/End: Complemental strand, 34554932 - 34554507
Alignment:
| Q |
12 |
aaaaacgtagcaaaataatattcacatcaagaaatgaaaaggaatgtcaaaagatgggaagccaagtgaattttcatgtttctattttgcttaaggatga |
111 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34554932 |
aaaaatgtagcaaaataatattcacatcacgaaatgaaaaggaatgtcaaaagatgggaagccaagtgaattttcatgtttctattttgcttaaggatga |
34554833 |
T |
|
| Q |
112 |
agcctggtatctgtttcaatcaatggcaggagatgttgtatatgtacctcatatttatccaatagcaaaacaagttgcaaaggaatgtggaggcttgcct |
211 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34554832 |
agcctggtatctgtttcaatcaatggcaggtgatgttgtatatgaacctcgtatttatccaatagcaaaacaagttgcaaaggaatgtggaggcttgcct |
34554733 |
T |
|
| Q |
212 |
cttgctattgtaattgttggaaaagcacttgaaaatgagaaaaagcttagtgcatgggaggatgcatttgaacaattacaaaattcacaatcatcttcct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34554732 |
cttgctattgtaattgttggaaaagcacttgaaaatgagaaaaagcttagtgcatgggaggatgcatttgaacaattacaaaattcacaatcatcttcct |
34554633 |
T |
|
| Q |
312 |
tctcagatgttcacaattttgtttactcacgcatcgaacttagtttcaaattttcgggtagcacagaacacaagaaattccttatgctttgtggattgtt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34554632 |
tctcagatgttcacaattttgtttactcacgcatcgaacttagtttcaaattttggggtagcacagaacacaagaaattccttatgctttgtggattgtt |
34554533 |
T |
|
| Q |
412 |
tccggaagactttgacatacctattg |
437 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34554532 |
tccggaagactttgacatacctattg |
34554507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 263 - 429
Target Start/End: Complemental strand, 34566355 - 34566189
Alignment:
| Q |
263 |
gcatgggaggatgcatttgaacaattacaaaattcacaatcatcttccttctcagatgttcacaattttgtttactcacgcatcgaacttagtttcaaat |
362 |
Q |
| |
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||||||||||||||| || ||| ||| ||||| ||||||||| |||||||||| ||| || ||||| ||| | |||| || |||||||| || | |
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| T |
34566355 |
gcatgggaggatgcacttagacatttaagaaattttcaatcatctcccttctcagacgttggaaaatttgtctaccccagcattgagcttagtttaaagt |
34566256 |
T |
|
| Q |
363 |
tttcgggtagcacagaacacaagaaattccttatgctttgtggattgtttccggaagactttgacat |
429 |
Q |
| |
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||| || |||| |||||| ||| |||||||||||||||||||||| ||| |||||||||||||| |
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| T |
34566255 |
ttttggacagcagagaacataagctcttccttatgctttgtggattgtatccagaagactttgacat |
34566189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 34291731 - 34291686
Alignment:
| Q |
392 |
cttatgctttgtggattgtttccggaagactttgacatacctattg |
437 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||||| ||||||| |
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| T |
34291731 |
cttatgctttgtggattatttccagaagactttgacattcctattg |
34291686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 34566430 - 34566375
Alignment:
| Q |
185 |
gttgcaaaggaatgtggaggcttgcctcttgctattgtaattgttggaaaagcact |
240 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| | ||||||| |||||| |
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|
| T |
34566430 |
gttgcaaaggaatgtggtggcttgcctcttgcaattgtgacagttggaagagcact |
34566375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 34291952 - 34291899
Alignment:
| Q |
168 |
atccaatagcaaaacaagttgcaaaggaatgtggaggcttgcctcttgctattg |
221 |
Q |
| |
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|||||||||||||| | ||||||||||||||||| ||||| || ||||| |||| |
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| T |
34291952 |
atccaatagcaaaagaggttgcaaaggaatgtggcggcttaccgcttgcaattg |
34291899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 437
Target Start/End: Original strand, 129864 - 130289
Alignment:
| Q |
12 |
aaaaacgtagcaaaataatattcacatcaagaaatgaaaaggaatgtcaaaagatgggaagccaagtgaattttcatgtttctattttgcttaaggatga |
111 |
Q |
| |
|
||||| ||| |||||| ||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |
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|
| T |
129864 |
aaaaatgtatcaaaattgtattcacatcacgaattgaaaaggagtgtcaaaagatgggaagtcaagtgaattttcatgtttctattttgctcaaggaaga |
129963 |
T |
|
| Q |
112 |
agcctggtatctgtttcaatcaatggcaggagatgttgtatatgtacctcatatttatccaatagcaaaacaagttgcaaaggaatgtggaggcttgcct |
211 |
Q |
| |
|
|||||||||||| ||||| |||||| |||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
129964 |
agcctggtatctctttcagtcaatgacaggtgatgttgtatatgaacctcatatttatccaattgcaaaacaagttgcaaaggaatgtggaggtttgcct |
130063 |
T |
|
| Q |
212 |
cttgctattgtaattgttggaaaagcacttgaaaatgagaaaaagcttagtgcatgggaggatgcatttgaacaattacaaaattcacaatcatcttcct |
311 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
130064 |
ctcgctattgtaattgttggtaaagcacttgaaaatgagaaagagcttactgcatgggaggatggatttgaacaattacaaaattcacagtcatcttcct |
130163 |
T |
|
| Q |
312 |
tctcagatgttcacaattttgtttactcacgcatcgaacttagtttcaaattttcgggtagcacagaacacaagaaattccttatgctttgtggattgtt |
411 |
Q |
| |
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|| ||||||||||||||| ||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
130164 |
tcccagatgttcacaattatgtttactcgcgcatcgagcttagtttcaaaattttgggtagcacagaacacaagaagctccttatgctttgtggattatt |
130263 |
T |
|
| Q |
412 |
tccggaagactttgacatacctattg |
437 |
Q |
| |
|
||| ||||||||||| || ||||||| |
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| T |
130264 |
tccagaagactttgatattcctattg |
130289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 282 - 437
Target Start/End: Complemental strand, 15896026 - 15895871
Alignment:
| Q |
282 |
aacaattacaaaattcacaatcatcttccttctcagatgttcacaattttgtttactcacgcatcgaacttagtttcaaattttcgggtagcacagaaca |
381 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||||||| | || ||||| || | ||||| || |||||||| || |||| ||| | || |||| | |
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| T |
15896026 |
aacaattaagaaattttcaatcatcttcctcgtcagatgttgaaaaatttgtccaccctcgcattgagcttagtttaaagtttttgggaaacaaagaata |
15895927 |
T |
|
| Q |
382 |
caagaaattccttatgctttgtggattgtttccggaagactttgacatacctattg |
437 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||| || ||||||| |
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|
| T |
15895926 |
caagctattccttatgctttgtggattgtttcctgaagactttgatattcctattg |
15895871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 15896172 - 15896065
Alignment:
| Q |
133 |
aatggcaggagatgttgtatatgtacctcatatttatccaatagcaaaacaagttgcaaaggaatgtggaggcttgcctcttgctattgtaattgttgga |
232 |
Q |
| |
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||||||||||||||||||| | || | |||| |||||||||||| | | |||||||||| |||||| |||||||| ||||| ||||| | |||||| |
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| T |
15896172 |
aatggcaggagatgttgtaaacaaacatgatatcaatccaatagcaagagaggttgcaaaggcatgtggtggcttgccccttgcaattgtgacagttgga |
15896073 |
T |
|
| Q |
233 |
aaagcact |
240 |
Q |
| |
|
| |||||| |
|
|
| T |
15896072 |
agagcact |
15896065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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