View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_high_21 (Length: 460)
Name: NF1254_high_21
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 453
Target Start/End: Complemental strand, 33486902 - 33486486
Alignment:
| Q |
30 |
gaattaactcacgtaaggcgtaaatgagcaaaaacatataggagaagggcaattcannnnnnnnnnnnnnnnnnnnnggcttacttagctttgggcttat |
129 |
Q |
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| T |
33486902 |
gaattaactcacgtaaagcgtaaatgagcaaaaacatataggagaagggcaattcaatttttttttttgttttt---ggcttacttagctttgggcttat |
33486806 |
T |
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| Q |
130 |
accatgcatccagccagctcttgtatgggacagatannnnnnnncacttgaaaaattgtatgggacggatattgttttgtaaccataatgagtaagaaag |
229 |
Q |
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| T |
33486805 |
accatgcatccagccagctcttgtatgggacagatattttttt-cacttgaaaaattgtatgggacggatattgttttgtaaccataatgagtaagaaag |
33486707 |
T |
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| Q |
230 |
tagctttggtgagtgtacaataatgccaaagaaaatgcttatatggctggcgttttaacttttagttatatatagaagcagcaacttttaatgagtagag |
329 |
Q |
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| T |
33486706 |
tagctttggtgagtgtacaataatgccaaagaaaatgcttatatggctggcgttttaacttttagttatatatagaagcagcaacttttaatgagtagag |
33486607 |
T |
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| Q |
330 |
tagcactatatttgtaacacgtacagagtatagagacccccactgagtcacactgactgattaagaaggaagnnnnnnnnnggatatttggcaacttttc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
33486606 |
tagcactatatttgtaacacgtacagagtatagagaccaccactgagt--cactgactgcttaagagggaag-gtttttttggatatttggcaacttttc |
33486510 |
T |
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| Q |
430 |
taatgctttggtttcttcttttct |
453 |
Q |
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|||||||||||||||||||||||| |
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| T |
33486509 |
taatgctttggtttcttcttttct |
33486486 |
T |
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