View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_high_22 (Length: 451)
Name: NF1254_high_22
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 24809609 - 24810016
Alignment:
| Q |
12 |
agagaggcattacctatagtttgtaacaaagtaatgaagaaaaagagcaatttgaaggcgagctagctcagctccaggacaaaatctagcacctcctcca |
111 |
Q |
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| T |
24809609 |
agagaggcattacctatagtttgtaacaaagtaatgaagaaaaagagcaatttgaaggcgagctagctcagctccaggacaaaatctagcacctcctcca |
24809708 |
T |
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| Q |
112 |
aagggtgcataaaatggactacttctccaatttctcttttccttcataattgagaccataacaattaagaaannnnnnnnngaaatacaagtacaaaatt |
211 |
Q |
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| T |
24809709 |
aagggtgcataaaatggactacttctccaatttctcttttccttcataattgagaccataacaattaagaaaaaaaattt-gaaatacaagtacaaaaat |
24809807 |
T |
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| Q |
212 |
atatatatgcagtattcactaaaatggtatgtggattaacctcattttcaggttccatccatctccaaggattgaaatttttagcttcattgtacacctt |
311 |
Q |
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| T |
24809808 |
---tatatacagtattcactaaaatgttatgtggattaacctcattttcaggttccatccatctccaaggattgaaatttttagcttcattgtacacctt |
24809904 |
T |
|
| Q |
312 |
ctcatctaaatgaactgctgagagaaatggaaccacaaaacatccttttggtataacaaaatctgctcaaaaacatataagttattgtcagtagtttata |
411 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809905 |
ctcatctaaatgaactgctgaaagaaatggaaccacaaaacatccttttggtataacaaaatctgctcaaaaacatataagttattgtcagtagtttata |
24810004 |
T |
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| Q |
412 |
agtattaagctt |
423 |
Q |
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|||||||||||| |
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| T |
24810005 |
agtattaagctt |
24810016 |
T |
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