View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_high_23 (Length: 447)
Name: NF1254_high_23
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 161 - 438
Target Start/End: Original strand, 46185519 - 46185797
Alignment:
| Q |
161 |
atacattgtatgaaatgctcttt-gtgttttttaatagacctgaagtcaaaagtctagttcgtaataaatatcaagtaggtcacttagnnnnnnnggtca |
259 |
Q |
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| T |
46185519 |
atacattgtatgaaatgctcttttgtgttttttaatagacctgaagtcaaaagtctagttcgtaataaatatcaagtaggtcacttagtttatttggtga |
46185618 |
T |
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| Q |
260 |
ttctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggtattctcacctgtgttcagatacctgcactgtgaattctaaaaagt |
359 |
Q |
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| T |
46185619 |
ttctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggtattctcacctgtgttcagatacctccactgtgaattctaaaaagt |
46185718 |
T |
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| Q |
360 |
attgtactctatcatcaaatgataaatttgctttcattttcatagccgaaacacgaaggttaccaaattctagaataat |
438 |
Q |
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| T |
46185719 |
attgtactctatcatcaaatgataaatttgctttcattttcatagccgaaacacgaaggttaccaaattctagaataat |
46185797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 29 - 165
Target Start/End: Original strand, 46185347 - 46185483
Alignment:
| Q |
29 |
aaatgtttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctcgagagaagacgaagcatcatgaagtaacaattc |
128 |
Q |
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| T |
46185347 |
aaatgtttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctccagagaagacgaagcatcatgaagtaacaattc |
46185446 |
T |
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| Q |
129 |
gtttcaatgtgactgttggacctgacctgagtataca |
165 |
Q |
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| T |
46185447 |
gtttcaatgtgactgttgcacctgacctgagtataca |
46185483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 221 - 315
Target Start/End: Original strand, 46169863 - 46169957
Alignment:
| Q |
221 |
gtaataaatatcaagtaggtcacttagnnnnnnnggtcattctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggta |
315 |
Q |
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| T |
46169863 |
gtaataaatgtcaagtaggtcacttagtttttttggtgattctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggta |
46169957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 5895340 - 5895242
Alignment:
| Q |
34 |
tttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctcgagagaagacgaagcatcatgaagtaacaattcgttt |
132 |
Q |
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| T |
5895340 |
tttgatagtgaacaaattcagatgagaagagaatgattgagatgacaaagtggaagctccaccaaagaagacgaagcaccgggaagtaacaatttgttt |
5895242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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