View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_high_25 (Length: 442)
Name: NF1254_high_25
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 13066757 - 13067166
Alignment:
| Q |
1 |
gagaaaatttcagatgcccttcaacaatatatactgaactaaacacgtagtatacggtatctttttaagtaaaatctcgtaattgcgtcttaataattga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13066757 |
gagaaaatttcagatgcccttcaacaatatatactaaactaaacacgtagtatacggtatctttttaagtaaaatctcgttattgcgtcttaataattga |
13066856 |
T |
|
| Q |
101 |
ttgttaatttcactgactcacttaaatatcatgcacctaacacttccacaccaaggagagagcaagtcaattaagtttgcatttgtgtttatacattcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13066857 |
ttgttaatttcactgactcacttaaatatcatgcacctaacacttccacaccaaggagagagcaagtcaattaagtttgcatttgtgtttatacattcta |
13066956 |
T |
|
| Q |
201 |
agaa--atagtaagtgtgagaaagtacaacacttcaaggcgtgaaatgattaattctcttcatgcactaaaggatataaaattgtaaagaatgtacacat |
298 |
Q |
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|||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13066957 |
agaaatatagtaagcgtgggaaagtacaacacttcaaggcgtgaaatgattaattctcttcatgcactaaaggatataaaattgtaaagcatgtacacat |
13067056 |
T |
|
| Q |
299 |
tttataagcatacatcatagacaattgcaagtcaaaacatacttaggtaaatctgcaatgtgcaagattcagtgtattgcaggatttgtagccatcccct |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13067057 |
tttataagcatacatcatagacaattgcaagtcaaaacatacttaggtaaatctgcaatgtgcaagattcagtgtattgcaggatttgtagccatcccct |
13067156 |
T |
|
| Q |
399 |
ttttcatatc |
408 |
Q |
| |
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|||||||||| |
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|
| T |
13067157 |
ttttcatatc |
13067166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 153 - 388
Target Start/End: Original strand, 30364919 - 30365154
Alignment:
| Q |
153 |
aaggagagagcaagtcaattaagtttgcatttgtgtttatacattctaagaa-atagtaagtgtgagaaagtacaacacttcaaggcgtgaaatgattaa |
251 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||||||| |||||||| |||| |
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| T |
30364919 |
aaggagaaagcaagtcaattaagtttgcatttgtgtttatacattctaagaatatagtaagcgtcagaaagggcaacacttcaaggtgtgaaatggttaa |
30365018 |
T |
|
| Q |
252 |
ttctcttcatgcactaaaggatataaaattgtaaagaatgtacacattttataagcatacatcatagacaattgcaagtcaaaacata-cttaggtaaat |
350 |
Q |
| |
|
||||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| | | ||| ||||| || ||||||| || | ||||| |
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| T |
30365019 |
ttctc--catgcactaaagactataaaagtgtaaagtatgtacacattttataagcatacattaaaaacacatgcaattcgaaacatacctaaattaaat |
30365116 |
T |
|
| Q |
351 |
ctgcaatgtgcaagattcagtgtattgcaggatttgta |
388 |
Q |
| |
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|| ||||||||| |||||| ||||||| || ||||||| |
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| T |
30365117 |
ctacaatgtgcatgattcaatgtattggagaatttgta |
30365154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 153 - 405
Target Start/End: Original strand, 30366755 - 30367011
Alignment:
| Q |
153 |
aaggagagagcaagtcaattaagtttgcatttgtgtttatacattctaagaaa--tagtaagtgtgagaaagtacaacacttcaaggcgtgaaatgatta |
250 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |||||||||||||| ||||||| |||| || || ||||| |||||||| | || |||||||| | | |
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| T |
30366755 |
aaggagaaagcaagtcaattaagttcgcatctgtgtttatacattttaagaaagatagtcagcctggaaaagtgcaacacttaatggggtgaaatggtaa |
30366854 |
T |
|
| Q |
251 |
attctcttcatgcactaaaggatataaaattgt-aaagaatgtacacattttataagcatacatcatagacaattgcaagtcaaaacata-cttaggtaa |
348 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||| |||| |||||||||||||||||||||||||| | ||| ||||| | ||||| | || | |||| |
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| T |
30366855 |
attctcttcatgaactaaaggctataaaagtgtaaaagcatgtacacattttataagcatacatctaaaacacatgcaatttgaaacacacctaaagtaa |
30366954 |
T |
|
| Q |
349 |
atctgcaatgtgcaagattcagtgtattgcaggatttgtagccatcccctttttcat |
405 |
Q |
| |
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|||| ||||||| | |||||| ||||||| |||||||||||| |||| ||| ||||| |
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|
| T |
30366955 |
atctacaatgtgtatgattcaatgtattggaggatttgtagctatcctcttcttcat |
30367011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 395
Target Start/End: Complemental strand, 13008650 - 13008484
Alignment:
| Q |
234 |
aaggcgtgaaatgattaattctcttcatgcactaaaggatataaaattgtaaagaat--gtacacattttataagcatacatcatagacaattgcaagtc |
331 |
Q |
| |
|
|||| |||||| | || |||||| | |||||||||||| |||| || ||||||| || ||||||| |||||| |||| ||||| ||||| ||||| | |
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|
| T |
13008650 |
aaggtgtgaaacggttcattctcataatgcactaaaggctatataagtgtaaagcatatgtacacaatttatatgcatgcatcaaagacacatgcaattt |
13008551 |
T |
|
| Q |
332 |
aaaa---catacttaggtaaatctgcaatgtgcaagattcagtgtattgcaggatttgtagccatcc |
395 |
Q |
| |
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||| ||||||| |||||||| |||||| || ||||||||||||| ||||||||||||||||| |
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| T |
13008550 |
gaaaacacatactttagtaaatctacaatgtccataattcagtgtattggaggatttgtagccatcc |
13008484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 13006288 - 13006228
Alignment:
| Q |
242 |
aaatgattaattctcttcatgcactaaaggatataaaattgtaaagaatgtacacatttta |
302 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| || ||||||| ||||||| |||||| |
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|
| T |
13006288 |
aaatggttaattctcttcatgcactaaagaatatataagtgtaaagcatgtacatatttta |
13006228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 393
Target Start/End: Complemental strand, 13205896 - 13205757
Alignment:
| Q |
255 |
tcttcatgcactaaaggatataaaattgtaaagaatgtacacattttataagcatacatcatagacaattgcaa-gtcaaaacatacttaggtaaatctg |
353 |
Q |
| |
|
|||||| |||||||||| |||| || ||||||| ||||||||||||||||||||| ||| | | ||| ||||| | |||||| |||| |||||||| |
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|
| T |
13205896 |
tcttcacgcactaaaggctatataagtgtaaagcatgtacacattttataagcatgcatgaaaaacacatgcaatttgaaaacacactttagtaaatcta |
13205797 |
T |
|
| Q |
354 |
caatgtgcaagattcagtgtattgcaggatttgtagccat |
393 |
Q |
| |
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|||||| | ||||||||||||| |||||| ||||||| |
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| T |
13205796 |
caatgtcaataattcagtgtattggaggattactagccat |
13205757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 13136341 - 13136395
Alignment:
| Q |
255 |
tcttcatgcactaaaggatataaaattgtaaagaatgtacacattttataagcat |
309 |
Q |
| |
|
|||||| |||||||||| |||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
13136341 |
tcttcacgcactaaaggctatataagtgtaaagcatgtacacattttataagcat |
13136395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 13102589 - 13102535
Alignment:
| Q |
255 |
tcttcatgcactaaaggatataaaattgtaaagaatgtacacattttataagcat |
309 |
Q |
| |
|
|||||| ||| |||||| |||| || ||||||| ||||||||||||||||||||| |
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|
| T |
13102589 |
tcttcacgcagtaaaggctatataagtgtaaagcatgtacacattttataagcat |
13102535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 13162963 - 13162909
Alignment:
| Q |
255 |
tcttcatgcactaaaggatataaaattgtaaagaatgtacacattttataagcat |
309 |
Q |
| |
|
|||||| |||||||||| |||| || ||||||| |||||||||||||| |||||| |
|
|
| T |
13162963 |
tcttcacgcactaaaggctatataagtgtaaagcatgtacacattttaaaagcat |
13162909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 31385047 - 31385138
Alignment:
| Q |
249 |
taattctcttcatgcactaaaggatataaaattgtaaagaatgtacacattttataagcatacatcatagacaattgcaagtcaaaacatac |
340 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | ||||| ||||||| ||||||||||||||||||| | | | ||||| ||||||||||| |
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|
| T |
31385047 |
taattctcttcatgcactaaagactataaaagtataaagcatgtacatattttataagcatacatcaaacaaacatgcaattcaaaacatac |
31385138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 31380118 - 31380158
Alignment:
| Q |
154 |
aggagagagcaagtcaattaagtttgcatttgtgtttatac |
194 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
31380118 |
aggagaaagcaagtcaattaagtttgcattagtgtttatac |
31380158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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