View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1254_high_28 (Length: 423)
Name: NF1254_high_28
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 24809159 - 24809540
Alignment:
| Q |
1 |
tacattatacaatacaagtataaaacccttacatgagtaaatgaacatgtaattatatgtatacatgaaaacataatataaactctgaaacacatacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24809159 |
tacattatacaatacaagtataaaacccttacatgagtaaatgaacatgtaattatatgtatacatgaaaacataatataaactctgaaacacatacata |
24809258 |
T |
|
| Q |
101 |
attgttgtggacaacaactgagagagtatctcagcaaaaacatgtagtcagagaaaacaacagtgactnnnnnnntagttgagatgaacatggtgacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24809259 |
attgttgtggacaacaactgagagagtatctcagcaaaaacatgtagtcagagaaaacaacagtgactaaaaaaatagttgagatgaacatggtgacata |
24809358 |
T |
|
| Q |
201 |
tgtttcagtttctttgattattatcatgtctctttgtaagacaaatttcaaagccattcactaaccgagctgagggaaaaaaggacatcctatcttcctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24809359 |
tgtttcagtttctttgattattatcatgtctctttgtaagacaaatttcaaagccattcactaaccgagctgagggaaaaaaggacatcctatcttcctt |
24809458 |
T |
|
| Q |
301 |
catttgtttccatctgttgtatatcattcaaacatgttagctaggatcaaatttgatagattacgtggttttctcaaattat |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24809459 |
catttgtttccatctgttgtatatcattcaaacatgttagctaggatcaaatttgatagattacgtggttttttcaaattat |
24809540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 29946339 - 29946405
Alignment:
| Q |
297 |
ccttcatttgtttccatctgttgtatatcattcaaacatgttagctaggatcaaatttgatagatta |
363 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
29946339 |
ccttcatttatttccgtctgctgtatatcatttaaacatgttaggtaggatcaaatttgatatatta |
29946405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University