View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1254_high_30 (Length: 408)
Name: NF1254_high_30
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 29 - 397
Target Start/End: Complemental strand, 31944165 - 31943775
Alignment:
| Q |
29 |
aagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttctannnnnnnn-attcaatgttga--- |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31944165 |
aagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttctatttttttttattcaatgttgaatg |
31944066 |
T |
|
| Q |
125 |
------taaattt-----gtgttttcttatattttacttgatttcatgagtttggtccttnnnnnnn----tgttgaatgtttgctgttttaggatttat |
209 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31944065 |
tttgcttatattttacttgtgttttcttatattttacttgatttcatgagtttagtccttcaaaaaaaaaatgttgaatgtttgctgttttaggatttat |
31943966 |
T |
|
| Q |
210 |
ttctatgattgcatgttgaaaattcggtgtttatgttattttgtttgattt-atgttgaaagnnnnnnnnnnn--agggtttatttcttcacatgttgaa |
306 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| |
|
|
| T |
31943965 |
ttctatgattacatgttgaaaattcggtgtttatgttattttgtttgattttatgttgaaagtttttttttttttagggtttatttcttcatatgttgaa |
31943866 |
T |
|
| Q |
307 |
aattttgttttcagggtttatttcttcatgttggaaattatattttaattgacatgatttcatgctgaaaattgtttgttttatggttcat |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
31943865 |
aattttgttttcagggtttatttcttcatgttggaaattatattttaattgacatgatttcttgctgaaaattgtgtgttttatggttcat |
31943775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 9394653 - 9394578
Alignment:
| Q |
29 |
aagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttcta |
104 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9394653 |
aagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttcta |
9394578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 9394534 - 9394445
Alignment:
| Q |
181 |
tgttgaatgtttgctgttttaggatttatttctatgattgcatgttgaaaattcggtgtttatgttattttgtttga-tttatgttgaaa |
269 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||| ||||| ||||||| || | || ||||||||||||||||||| |||||||||||| |
|
|
| T |
9394534 |
tgttgaaaatttgatgttttagggtttatttctttgatttcatgttggcaactgtgtttttatgttattttgtttgattttatgttgaaa |
9394445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 1342194 - 1342060
Alignment:
| Q |
29 |
aagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttcta-nnnnnnnnattcaatgttgataa |
127 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
1342194 |
aagtttcactatcatgaagcgaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctattttattttattaaatgttgataa |
1342095 |
T |
|
| Q |
128 |
atttgtg-ttttcttatattttacttgatttcatg |
161 |
Q |
| |
|
||||||| |||| || |||||||||| |||||||| |
|
|
| T |
1342094 |
atttgtgcttttgttttattttactttatttcatg |
1342060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 299 - 397
Target Start/End: Complemental strand, 1341981 - 1341881
Alignment:
| Q |
299 |
atgttgaaaattttgttttc-agggtttatttcttcatgttggaaattatattttaatt-gacatgatttcatgctgaaaattgtttgttttatggttca |
396 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||| || ||||||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
1341981 |
atgttcaaaattttgttttttagggtttatttcttcttgttggaaattaaatttttctttgacatgatttcttgcttaaaattgtgtgttttatggttca |
1341882 |
T |
|
| Q |
397 |
t |
397 |
Q |
| |
|
| |
|
|
| T |
1341881 |
t |
1341881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 1342052 - 1341983
Alignment:
| Q |
190 |
tttgctgttttaggatttatttctatgattgcatgttgaaaattcggtgt-ttatgttattttgtttgattt |
260 |
Q |
| |
|
|||| ||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
1342052 |
tttggtgttttagggtttatttctttgattgcatgttgaaaatt--gtgtattatgttattttgtttgattt |
1341983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 35535477 - 35535403
Alignment:
| Q |
30 |
agtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttcta |
104 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
35535477 |
agtttcattaccgtgaagcgaaagttgatggggttatatataatctggataataatgcttatgtcaaggtttcta |
35535403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 5644370 - 5644299
Alignment:
| Q |
29 |
aagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtt |
100 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||| || | ||||||||| | |||||||||||||| |||||| |
|
|
| T |
5644370 |
aagtttcattaccgtgaagtgaatgttgatggggttatatataagctgaatgataatgcttatgttaaggtt |
5644299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University