View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_high_31 (Length: 404)
Name: NF1254_high_31
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 12 - 375
Target Start/End: Original strand, 47879113 - 47879481
Alignment:
| Q |
12 |
agagagctttggtttagactttcaacacagcatcacaggatacaaatcgcttttcactcaatgtctgccgccacaaatccaatggtacgtgctacctcat |
111 |
Q |
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| T |
47879113 |
agagagctttggtttagactttcaacacagcatcacaggatacaaatcgcttttcactcaatgtctgccgccacaaatccaatggtacacgctacctcat |
47879212 |
T |
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| Q |
112 |
cgtcgtttactcgaatgttcttttcatttatctttctgtttaattttgaattggaattggaatgaatttaactgaactattattattgttgtgttcttaa |
211 |
Q |
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| T |
47879213 |
cgtcgtttactcgaatgttcttttcatttatctttctgtttaattttgaattggaattggaatgaatttaactgaactattattattgttgtgttcttaa |
47879312 |
T |
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| Q |
212 |
ttatta-----ttggcgacgaagatgtccagcgataacatgtcttatggaaaagttcccacgatggaagcagcggtagcatatgtcgaggctgtaaaaga |
306 |
Q |
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| T |
47879313 |
ttattattctcttggcgacgaagatgtccagcgataacacgtcttatggaaaagttcccacgatggaagcagcggtagcatatgtcgaggctgtaaaaga |
47879412 |
T |
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| Q |
307 |
cgagtttcaagatgagatagaaaagtatgatgaatttttaaatgttatgaaggatttcaaggctatgag |
375 |
Q |
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| T |
47879413 |
cgagtttcaagatgagatagaaaagtatgatgaatttttaaatgttatgaaggatttcaaggctatgag |
47879481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 371
Target Start/End: Complemental strand, 47881627 - 47881564
Alignment:
| Q |
308 |
gagtttcaagatgagatagaaaagtatgatgaatttttaaatgttatgaaggatttcaaggcta |
371 |
Q |
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| T |
47881627 |
gagtttcaagatgagatggaaaagtatgatgaatttttaaatgttatgaaagaattcaaggcta |
47881564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 47311034 - 47311095
Alignment:
| Q |
308 |
gagtttcaagatgagatagaaaagtatgatgaatttttaaatgttatgaaggatttcaaggc |
369 |
Q |
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|||||||||||| ||| ||||||||||| ||||||||| | ||||||| ||||||||||| |
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| T |
47311034 |
gagtttcaagataagagggaaaagtatgaagaatttttagaacttatgaaagatttcaaggc |
47311095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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