View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1254_high_41 (Length: 342)
Name: NF1254_high_41
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 29 - 329
Target Start/End: Original strand, 5187529 - 5187829
Alignment:
| Q |
29 |
aaatatgagaggggaaaggaaaaggttagaagatgtagggtaaaactgattctcattgattaacaacattgatacatggcatatatagagtcgtatgaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5187529 |
aaatatgagaggggaaaggaaaaggttagaagatgtagggtaaaactgattctcattgattaactacattgatacatggcatatatagagtcgtatgaaa |
5187628 |
T |
|
| Q |
129 |
agttagttgataacaaactagcttacttgccaaacaagtaagtccataactaactaacagactaatgagaataaaacaatgttatatacctaacaatcac |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5187629 |
agttagttgataacaaactagcttacttgccaaacaagtaagtccataactaactaacagactaatgagaataaaacaatgttatatacctaacaatcac |
5187728 |
T |
|
| Q |
229 |
tccccttgtttgaaaaatacttctagcttcaaaggtttagtcttgatgtctgctagttgattaatgtttgaactataataagcaaattccataactcctt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5187729 |
tccccttgtttgaaaaatacttctagcttcaaaggtttagtcttgatgtctgctggttgattaatgtttgaactataataagcaaattccataactcctt |
5187828 |
T |
|
| Q |
329 |
c |
329 |
Q |
| |
|
| |
|
|
| T |
5187829 |
c |
5187829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 4848032 - 4847911
Alignment:
| Q |
30 |
aatatgagaggggaaaggaaaaggttagaagatgtagggtaaaactgattctcattgattaacaacattgatacatggcatatatagagtcgtatgaaaa |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4848032 |
aatatgagaggggaaaggaaaaagttagaagatgtagggtaaaagtgattctcattgattagcagcattgatacatggcatatatagagtcgtatgaaaa |
4847933 |
T |
|
| Q |
130 |
gttagttgataacaaactagct |
151 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4847932 |
gttagttgataacaaactagct |
4847911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 4847505 - 4847446
Alignment:
| Q |
236 |
gtttgaaaaatacttctagcttcaaaggtttagtcttgatgtctgctagttgattaatgt |
295 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4847505 |
gtttgaagaatacttctaacttcaaaggtttagtcttgatgtctgctagttgattaatgt |
4847446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 4847688 - 4847607
Alignment:
| Q |
145 |
actagcttacttgccaaacaagtaagtccataactaactaacagactaatgagaataaaacaatgttatatacctaacaatcactc |
230 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
4847688 |
actagcttacttgcaaaacaagtaactccataactaac----agtctaatgagaataaaacaagtttttatatctaacaatcactc |
4847607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 182
Target Start/End: Complemental strand, 30398664 - 30398549
Alignment:
| Q |
67 |
ggtaaaactgattctcattgattaacaacattgatacatggcatatatagagtcgtatgaaaagttagttgataacaaactagcttacttgccaaacaag |
166 |
Q |
| |
|
||||||| ||| ||| ||||||||||||||| |||||| |||||||||| || || |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
30398664 |
ggtaaaagtgaatcttattgattaacaacatagatacaaggcatatatatagctaagtgcttagttagtttctaacaaactagcttacttgtgcaacaag |
30398565 |
T |
|
| Q |
167 |
taagtccataactaac |
182 |
Q |
| |
|
||||| | |||||||| |
|
|
| T |
30398564 |
taagttcttaactaac |
30398549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University