View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_high_49 (Length: 318)
Name: NF1254_high_49
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_49 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 307
Target Start/End: Original strand, 41795443 - 41795720
Alignment:
| Q |
30 |
acctcttcttgaagtttctgtttttccttggagacaacatcaaattcttgtttcaaaacatcatacaagtgttcaagctgcttagccttccaccttgtac |
129 |
Q |
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| T |
41795443 |
acctcttcttgaagtttctgtttttccttggagacaacatcaaattcttgtttcaaaacatcatacaagtgttcaagctgcttagccttccaccttgtac |
41795542 |
T |
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| Q |
130 |
gcctattttggaaccaaacagcaatttggcgaggttggagccctagctctcttgaaagcttcatcttcctttcagggtctagctttatttcttcttggaa |
229 |
Q |
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| T |
41795543 |
gcctattttggaaccaaacagcaatttggcgaggttggagccctagctctcttgaaagcttcatcttcctttcagggtctagctttatttcttcttggaa |
41795642 |
T |
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| Q |
230 |
actcttctccagtgaatcaatctggttacttgttaatctcttcttcttctctctataattatttccatcaatgttcat |
307 |
Q |
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| T |
41795643 |
actcttctccagtgaatcaatctggttacttgttaatctcttcttcttctctctataattatttccatcaatgttcat |
41795720 |
T |
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Back To:
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Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 89 - 277
Target Start/End: Complemental strand, 26932332 - 26932144
Alignment:
| Q |
89 |
atcatacaagtgttcaagctgcttagccttccaccttgtacgcctattttggaaccaaacagcaatttggcgaggttggagccctagctctcttgaaagc |
188 |
Q |
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|||||| ||||||||||| ||||| | ||||||||| | ||| |||||||||||||||| ||||||||| ||||| || ||||||| ||| | |||||| |
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| T |
26932332 |
atcatataagtgttcaagttgcttggtcttccacctagcacgtctattttggaaccaaatagcaatttgacgaggctgtagccctaactccttggaaagc |
26932233 |
T |
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| Q |
189 |
ttcatcttcctttcagggtctagctttatttcttcttggaaactcttctccagtgaatcaatctggttacttgttaatctcttcttctt |
277 |
Q |
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| T |
26932232 |
ttcatcttcctttgagggtctagtttgatctcctcttgaaaactactctccagtgattccatctgttcactcgttaatcgctttttctt |
26932144 |
T |
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