View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_high_52 (Length: 304)
Name: NF1254_high_52
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 1623376 - 1623121
Alignment:
| Q |
9 |
caacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacacagattttgctcaagaca |
108 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1623376 |
caacaattctcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacacagattttgctcaagata |
1623277 |
T |
|
| Q |
109 |
cattgtattatggagagtatgaaaactatggacctggttcatcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1623276 |
cattgtattatggagagtatgaaaactatggacctggttcatcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagc |
1623177 |
T |
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| Q |
209 |
atcaaagtttacggttgctggactccttgctggaccaacgtggttggctacaacta |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1623176 |
atcaaagtttacggttgctggactccttgctggaccaacatggttggctacaacta |
1623121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 1629552 - 1629297
Alignment:
| Q |
9 |
caacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacacagattttgctcaagaca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1629552 |
caacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacactgattttgctcaagaca |
1629453 |
T |
|
| Q |
109 |
cattgtattatggagagtatgaaaactatggacctggttcatcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagc |
208 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||| ||||||||| |
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| T |
1629452 |
cattgtattatggagagtatgagaattatggacctggttcatcaacagcaaatagggtgaaatggcctggttatcatgtgatatcaaacccaaaggaagc |
1629353 |
T |
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| Q |
209 |
atcaaagtttacggttgctggactccttgctggaccaacgtggttggctacaacta |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1629352 |
atcaaagtttacggttgctggactccttgctggaccaacatggttggctacaacta |
1629297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 10821146 - 10821401
Alignment:
| Q |
9 |
caacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacacagattttgctcaagaca |
108 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10821146 |
caacaatattcaagagttatggtgatgaaaacttttatggacactttagtcagccccctaggttggtctccatggggtgacactgattttgctcaagaca |
10821245 |
T |
|
| Q |
109 |
cattgtattatggagagtatgaaaactatggacctggttcatcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagc |
208 |
Q |
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|
|||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
10821246 |
cattgtattatggagagtatgagaattatggacctggttcatcaacaacaaacagggtaaattggcctggttatcatgtgataacaaacccaaaggaagc |
10821345 |
T |
|
| Q |
209 |
atcaaagtttacggttgctggactccttgctggaccaacgtggttggctacaacta |
264 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |
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| T |
10821346 |
atcaaagtttacggttgctggactccttgctggtccaacatggttggctaaaacta |
10821401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 1606254 - 1605999
Alignment:
| Q |
9 |
caacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacacagattttgctcaagaca |
108 |
Q |
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|
||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
1606254 |
caacaatattcaagagttatggtgatgaaaactttcatggacactttagtaagccccctgggttggtctccatggggtgacactgattttgctcaagaca |
1606155 |
T |
|
| Q |
109 |
cattgtattatggagagtatgaaaactatggacctggttcatcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagc |
208 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || ||||| |
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| T |
1606154 |
cattgtattatggagagtatgagaattatggacctggttcatcaacagcaaatagagtaaaatggcctggttatcatgtgatatcaaaccctaatgaagc |
1606055 |
T |
|
| Q |
209 |
atcaaagtttacggttgctggactccttgctggaccaacgtggttggctacaacta |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1606054 |
atcaaagtttacggttgctggactccttgctggaccaacatggttggctacaacta |
1605999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 18781070 - 18780815
Alignment:
| Q |
9 |
caacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacacagattttgctcaagaca |
108 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18781070 |
caacaatattcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttggtctccatggggtgacactgattttgctcaagaca |
18780971 |
T |
|
| Q |
109 |
cattgtattatggagagtatgaaaactatggacctggttcatcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagc |
208 |
Q |
| |
|
||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
18780970 |
cattgtattatggcgagtatgagaattatggacctggttcatcaacagcaaatagagtaaaatggcctggttatcatgcgataacaaaccctaaggaagc |
18780871 |
T |
|
| Q |
209 |
atcaaagtttacggttgctggactccttgctggaccaacgtggttggctacaacta |
264 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||| ||| |||||||||||| |
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| T |
18780870 |
atcaaagtttacggttgctggactcattactggaccaacatggctggctacaacta |
18780815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 12802576 - 12802458
Alignment:
| Q |
69 |
ggttggtctccatggggtgacacagattttgctcaagacacattgtattatggagagtatgaaaactatggacctggttcatcaacaacaaatagagtaa |
168 |
Q |
| |
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||||||||||||||||| | || ||||||||||| ||| | | |||||||||||| | |||| ||| ||||| |||||||||| ||||||||||| |
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| T |
12802576 |
ggttggtctccatggggaggtactaattttgctcaaagcactctattttatggagagtacaagaactttgggcctggatcatcaacaagaaatagagtaa |
12802477 |
T |
|
| Q |
169 |
aatggcctggttatcatgt |
187 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
12802476 |
gatggcctggttatcatgt |
12802458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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