View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1254_high_58 (Length: 279)
Name: NF1254_high_58
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_58 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 47 - 269
Target Start/End: Original strand, 31494553 - 31494775
Alignment:
| Q |
47 |
ttatctacccaaaaatataaaaaagtaatcacatagtattggatgattgataccatgactttctctaagaattgaagttcgatttattgagcaatctatt |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31494553 |
ttatctacccaaaaatataaaaaagtaatcacatagtattggatgattgataccatgactttctctaagaattgaagttcgatttatagagcaatctatt |
31494652 |
T |
|
| Q |
147 |
atagataaagtctaattacataaaaagttagaatttctccaatgtataatgttatattcctctttagatttcttaaaaagtactcttaatacttgttagc |
246 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31494653 |
atagataaagtctaattccataaaaagttagaatttctccaatttataatgttatattcctctttagatttcttaaaaagtacttttaatacttgttagc |
31494752 |
T |
|
| Q |
247 |
attttccaaaaactaatcctatg |
269 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
31494753 |
attttccaaaaacaaatcctatg |
31494775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University