View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1254_high_7 (Length: 543)

Name: NF1254_high_7
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1254_high_7
NF1254_high_7
[»] chr5 (3 HSPs)
chr5 (190-360)||(14214492-14214662)
chr5 (360-480)||(14214400-14214521)
chr5 (281-352)||(963282-963353)
[»] chr7 (5 HSPs)
chr7 (277-352)||(7783576-7783651)
chr7 (274-346)||(30926687-30926759)
chr7 (274-346)||(26028432-26028504)
chr7 (412-478)||(30918267-30918332)
chr7 (276-325)||(30918397-30918446)
[»] chr2 (1 HSPs)
chr2 (295-351)||(15434615-15434671)
[»] chr3 (1 HSPs)
chr3 (412-450)||(11603022-11603060)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 7e-75; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 190 - 360
Target Start/End: Complemental strand, 14214662 - 14214492
Alignment:
Q  190 ggtgagaaaatggggcaaggagtggagacaatagcttaacccatcttcgggcatattaggagcggccagaatcatttggaagttaaggaatcatcaacca 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||     
T  14214662 ggtgagaaaatggggcaaggagtggagacaatagcttaacccatcttcgggcatattaggagcggccagaatcattcggaagtcaatgaatcatcaaccg 14214563  T
Q  290 atgaacctttatttatgtttttcttttcatattcaacaatttatgtttaggaagcatcagtagaaaattct 360  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  14214562 atgaacctttatttatgtgtttcttttcatattcaacaatttatgtttaggaagcatgagtagcaaattct 14214492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 360 - 480
Target Start/End: Complemental strand, 14214521 - 14214400
Alignment:
Q  360 tatgtttaggatgcatgagtagaaaattctctaggttaggtcattaaagttct-tgtaattgtttgatcatgtaacttttaatatcctttgagtacaatt 458  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||| |||||||    
T  14214521 tatgtttaggaagcatgagtagcaaattctctaggttaggtcattaaggttctctataattgttggatcatgtaacttttaatatcctttgaatacaatt 14214422  T
Q  459 tattgctttcatattattcgac 480  Q
    |||||||||||| |||||||||    
T  14214421 tattgctttcattttattcgac 14214400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 963353 - 963282
Alignment:
Q  281 catcaaccaatgaacctttatttatgtttttcttttcatattcaacaatttatgtttaggaagcatcagtag 352  Q
    ||||||||||||| | |||  |||||||||||||||||||||||| | ||||||||||| ||| || |||||    
T  963353 catcaaccaatgatcttttgcttatgtttttcttttcatattcaatagtttatgtttagaaagtatgagtag 963282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 352
Target Start/End: Complemental strand, 7783651 - 7783576
Alignment:
Q  277 gaatcatcaaccaatgaacctttatttatgtttttcttttcatattcaacaatttatgtttaggaagcatcagtag 352  Q
    |||||||||| | | || |||||||||||||||| |||||||||||||| ||||||| |||| ||||||| |||||    
T  7783651 gaatcatcaatcgacgatcctttatttatgttttccttttcatattcaataatttatatttacgaagcatgagtag 7783576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 30926759 - 30926687
Alignment:
Q  274 aaggaatcatcaaccaatgaacctttatttatgtttttcttttcatattcaacaatttatgtttaggaagcat 346  Q
    |||||||||||||| | ||| | ||||||||| |||| ||||||||||||||   ||||||||||||||||||    
T  30926759 aaggaatcatcaacaagtgatcatttatttatcttttccttttcatattcaattgtttatgtttaggaagcat 30926687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 26028504 - 26028432
Alignment:
Q  274 aaggaatcatcaaccaatgaacctttatttatgtttttcttttcatattcaacaatttatgtttaggaagcat 346  Q
    |||||||||||||||  ||| | ||||| |||||||| |||||||| ||||| | ||||||||||| ||||||    
T  26028504 aaggaatcatcaaccggtgatcatttatctatgttttccttttcatcttcaatagtttatgtttagcaagcat 26028432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 478
Target Start/End: Complemental strand, 30918332 - 30918267
Alignment:
Q  412 ttgtaattgtttgatcatgtaacttttaatatcctttgagtacaatttattgctttcatattattcg 478  Q
    ||||| ||||||||||||||||| |||| |||||||||| |||| || |||||||| || |||||||    
T  30918332 ttgtagttgtttgatcatgtaac-tttattatcctttgaatacatttgattgctttgattttattcg 30918267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 30918446 - 30918397
Alignment:
Q  276 ggaatcatcaaccaatgaacctttatttatgtttttcttttcatattcaa 325  Q
    |||||||||||||  ||| | |||||||||||||| ||||||||||||||    
T  30918446 ggaatcatcaaccggtgatcttttatttatgttttccttttcatattcaa 30918397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 15434671 - 15434615
Alignment:
Q  295 cctttatttatgtttttcttttcatattcaacaatttatgtttaggaagcatcagta 351  Q
    |||| ||||||||||| |||||||||| ||| | |||||||||||||||||| ||||    
T  15434671 ccttcatttatgttttccttttcatatgcaatactttatgtttaggaagcatgagta 15434615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 450
Target Start/End: Original strand, 11603022 - 11603060
Alignment:
Q  412 ttgtaattgtttgatcatgtaacttttaatatcctttga 450  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  11603022 ttgtaattgtttgatcatgtaacatttattatcctttga 11603060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University