View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_high_78 (Length: 251)
Name: NF1254_high_78
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_78 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4587468 - 4587226
Alignment:
| Q |
1 |
aatttaagtcttcaatttatttttcaaatcaattttacataaatttatataaatataaatcacattcaacgcactttcaactacaaagtaattttgttaa |
100 |
Q |
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| T |
4587468 |
aatttaagtcttcaatttatttttcaaatcaattttacgtaaatttatataaatatatatcacattcaacgcacttt-aaccaaacactaattttgttaa |
4587370 |
T |
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| Q |
101 |
acaaa--cattcaaatcaattctcgtcaccgcagtacaaatataggcttaagtttgtgctataaactttttaatgaaaatttgttttccttttataacaa |
198 |
Q |
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| T |
4587369 |
acaaattcattcaaatcaattctcgtcaccgcaa-acaaatacatacttaagtttgtgctataaactttttaatgaaaaattgatttccttttataacaa |
4587271 |
T |
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| Q |
199 |
aatgtggtcactttatctctattaaaccattggcttccctttgct |
243 |
Q |
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| T |
4587270 |
aaagtggtcactttatctctattaaaccattggcttccctttgct |
4587226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 4559073 - 4558861
Alignment:
| Q |
7 |
agtcttcaatttatttttcaaatcaattttacataaatttatataaatataaatcac-----attcaacgcactttcaactacaaagtaattttgttaaa |
101 |
Q |
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| T |
4559073 |
agtcttcaatttatagttcaaatcaattttacgtaaatttatataaacacaaattattttatattcaacgcacttttaacctgatactaattttatcaaa |
4558974 |
T |
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| Q |
102 |
caaa--cattcaaatcaattctcgtcaccgcagtacaaatat-aggcttaagtttgtgctataaactttttaatgaaaatttgttttccttttataacaa |
198 |
Q |
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| T |
4558973 |
caaattcattcaaatcaattctcgccaccgcaaaccaaaaggcatgcttaagtttgttcaataaactttttaatgaaaaattgttttccttctataacaa |
4558874 |
T |
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| Q |
199 |
aatgtggtcactt |
211 |
Q |
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| T |
4558873 |
aaagtggtgactt |
4558861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 4572802 - 4572758
Alignment:
| Q |
145 |
cttaagtttgtgctataaactttttaatgaaaatttgttttcctt |
189 |
Q |
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| T |
4572802 |
cttaagtttgtgctataaactttttaatgaaaaattgttttcctt |
4572758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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