View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1254_high_81 (Length: 235)

Name: NF1254_high_81
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1254_high_81
NF1254_high_81
[»] chr1 (5 HSPs)
chr1 (8-178)||(26990997-26991165)
chr1 (80-154)||(47445778-47445852)
chr1 (80-154)||(36475974-36476048)
chr1 (77-130)||(24646464-24646517)
chr1 (85-154)||(47445051-47445120)
[»] chr5 (8 HSPs)
chr5 (86-177)||(33136569-33136659)
chr5 (80-154)||(31808335-31808409)
chr5 (80-154)||(36429340-36429414)
chr5 (77-177)||(21012392-21012490)
chr5 (80-154)||(5347781-5347856)
chr5 (80-154)||(5348509-5348583)
chr5 (94-147)||(27597423-27597476)
chr5 (104-148)||(36681860-36681904)
[»] chr3 (10 HSPs)
chr3 (80-154)||(50838262-50838336)
chr3 (104-154)||(35942780-35942830)
chr3 (80-149)||(1576544-1576613)
chr3 (77-173)||(50381908-50382002)
chr3 (80-154)||(1577514-1577587)
chr3 (103-177)||(31799551-31799623)
chr3 (80-154)||(43546424-43546498)
chr3 (80-154)||(47471479-47471553)
chr3 (80-154)||(54560820-54560894)
chr3 (101-154)||(50837538-50837591)
[»] chr4 (5 HSPs)
chr4 (80-154)||(11147803-11147877)
chr4 (80-154)||(620528-620602)
chr4 (80-154)||(621539-621613)
chr4 (104-154)||(11148100-11148149)
chr4 (101-149)||(27455722-27455770)
[»] scaffold0020 (1 HSPs)
scaffold0020 (101-177)||(2026-2101)
[»] chr7 (5 HSPs)
chr7 (101-173)||(32390005-32390075)
chr7 (77-173)||(32390876-32390970)
chr7 (101-149)||(36068115-36068163)
chr7 (77-168)||(25634968-25635055)
chr7 (101-173)||(24240645-24240716)
[»] scaffold0102 (1 HSPs)
scaffold0102 (80-154)||(33147-33222)
[»] chr6 (5 HSPs)
chr6 (80-154)||(6009431-6009505)
chr6 (80-154)||(17732819-17732893)
chr6 (80-154)||(15347490-15347565)
chr6 (80-154)||(6008699-6008773)
chr6 (101-154)||(17732094-17732147)
[»] scaffold0380 (1 HSPs)
scaffold0380 (105-177)||(7521-7591)
[»] chr8 (3 HSPs)
chr8 (80-154)||(14790730-14790805)
chr8 (80-154)||(14791457-14791531)
chr8 (80-154)||(20112280-20112353)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 26991165 - 26990997
Alignment:
Q  8 cgaataatataacgagtaaataggcaaacaaaacctgaaattgtaactttcgtnnnnnnnnnnnnccctacatttaagaaacttccaaaacttccctgaa 107  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||            ||  |||||||||||||||| ||||||||||| ||    
T  26991165 cgaacaatataacgagtgaataggcaaacaaaacctgaaattgtaactttcgtaaaaaaaaaactccg-acatttaagaaacttcaaaaacttccctaaa 26991067  T
Q  108 attgtcaaaagttaatcaattactcccctccatttgttttggttgtttacaccctatgacgtggcagttac 178  Q
    ||||||||| |||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  26991066 attgtcaaacgttaatcaattactcccctcaacttgttttggttg-ttacaccctatgacgtggcagttac 26990997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 47445852 - 47445778
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||||||| ||||   |||||||||| ||||| |||| |||||||| |||||||||||||||||||||||    
T  47445852 tttaagaaacttcaaaaaaacccctgaaattatcaaacgttagtcaattacccccctccatttgttttggttgtt 47445778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 36476048 - 36475974
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||||||| |||||  || ||||||||| ||| |||| |||||||| |||||||||||||||||| ||||    
T  36476048 tttaagaaacttcaaaaacccccatgaaattgttaaacgttagtcaattacccccctccatttgttttggctgtt 36475974  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 24646517 - 24646464
Alignment:
Q  77 acatttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattac 130  Q
    |||||||||||||||| |||||   | ||||||||||||| |||||||||||||    
T  24646517 acatttaagaaacttcaaaaaccctcatgaaattgtcaaacgttaatcaattac 24646464  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 47445051 - 47445120
Alignment:
Q  85 gaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    |||||||| |||||  || ||||||||||||| |||| |||||||| ||||||| ||| |||||| ||||    
T  47445051 gaaacttcaaaaacccccatgaaattgtcaaacgttagtcaattacccccctccgtttattttggctgtt 47445120  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 33136659 - 33136569
Alignment:
Q  86 aaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtttacaccctatgacgtggcagtta 177  Q
    ||||||| |||||| |||||||||||| ||| |||| |||||||| ||||||||| |||||||| || |||||| |||||||||||||||||    
T  33136659 aaacttcaaaaactcccctgaaattgttaaacgttagtcaattacccccctccatctgttttggctg-ttacactctatgacgtggcagtta 33136569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 31808335 - 31808409
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||||||| ||||||  ||||||||||| ||| |||| |||||||| ||||||  |||||||||| ||||    
T  31808335 tttaagaaacttcaaaaactctcctgaaattgttaaacgttagtcaattacccccctcagtttgttttggctgtt 31808409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 36429340 - 36429414
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||||||| |||||  |||||||||| ||||| || | |||||||| ||||||| |||||||||| ||||    
T  36429340 tttaagaaacttcaaaaacgcccctgaaattatcaaacgtcagtcaattacccccctccgtttgttttggctgtt 36429414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 21012490 - 21012392
Alignment:
Q  77 acatttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtttacaccctatgacgtggcagtt 176  Q
    |||||||||||||||| ||| |   | ||||||||||||| ||||||||||||| ||||||  |||||||||| |  ||||||| ||||| |||||||||    
T  21012490 acatttaagaaacttcaaaaccccacttgaaattgtcaaacgttaatcaattac-cccctctgtttgttttggct-attacaccatatgatgtggcagtt 21012393  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 5347781 - 5347856
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccc-tccatttgttttggttgtt 154  Q
    ||||||||||||| |||||  |||||||||| ||||| |||| |||||||| |||| ||| |||||||||| ||||    
T  5347781 tttaagaaacttcaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgtt 5347856  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 5348583 - 5348509
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    |||| |||||||| ||||   ||||||||||| |||| |||| |||||||| ||||||| |||||||||| ||||    
T  5348583 tttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgtt 5348509  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 27597476 - 27597423
Alignment:
Q  94 aaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgtttt 147  Q
    |||| ||| |||||||||||||| | || |||||||||||||||| ||||||||    
T  27597476 aaaaattctctgaaattgtcaaatgctagtcaattactcccctccgtttgtttt 27597423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 36681904 - 36681860
Alignment:
Q  104 tgaaattgtcaaaagttaatcaattactcccctccatttgttttg 148  Q
    ||||||||||||| |||| |||||||| ||||||| |||||||||    
T  36681904 tgaaattgtcaaacgttagtcaattacccccctccgtttgttttg 36681860  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 50838336 - 50838262
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||||||| |||||| |||||||||| ||||| |||| |||||||| ||||||| |||||||||| ||||    
T  50838336 tttaagaaacttcaaaaactcccctgaaattatcaaacgttagtcaattacccccctccgtttgttttggctgtt 50838262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 35942830 - 35942780
Alignment:
Q  104 tgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||| ||| |||| |||||||| |||||||||||||||||||||||    
T  35942830 tgaaattgttaaacgttagtcaattacccccctccatttgttttggttgtt 35942780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 1576544 - 1576613
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttgg 149  Q
    |||| |||||||| |||||  ||||||||||| |||| |||| |||||||| ||||||| ||||||||||    
T  1576544 tttaggaaacttcaaaaacccccctgaaattgacaaacgttagtcaattacccccctccgtttgttttgg 1576613  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 50381908 - 50382002
Alignment:
Q  77 acatttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtttacaccctatgacgtggca 173  Q
    |||||||||||||||| ||| |  | |||||||||||||| |||| |||||||| ||||||  |||||||||| || ||| ||| ||||||||||||    
T  50381908 acatttaagaaacttc-aaatcccctctgaaattgtcaaacgttagtcaattacccccctctgtttgttttggctg-ttaaaccatatgacgtggca 50382002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 1577587 - 1577514
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    |||| |||||||| |||||  ||||||||||| |||| |||| |||||||| ||||||| |||||||||| ||||    
T  1577587 tttaggaaacttcaaaaacc-ccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgtt 1577514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 31799551 - 31799623
Alignment:
Q  103 ctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtttacaccctatgacgtggcagtta 177  Q
    |||||||||||||| |||| |||||||| ||||||| |||||||||  || ||| |||||||||| |||||||||    
T  31799551 ctgaaattgtcaaatgttagtcaattac-cccctccgtttgttttgactg-ttaaaccctatgacatggcagtta 31799623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 43546424 - 43546498
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||||||| |||||  | |||||||| ||||| || | |||||||| ||||||| |||||||||| ||||    
T  43546424 tttaagaaacttcaaaaacccctctgaaattatcaaacgtcagtcaattacccccctccgtttgttttggctgtt 43546498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 47471553 - 47471479
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    |||| |||||||| |||||  ||||||||||| |||| |||| |||||||| ||||||  |||||||||| ||||    
T  47471553 tttaggaaacttcaaaaacccccctgaaattgccaaacgttagtcaattacccccctctgtttgttttggctgtt 47471479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 54560894 - 54560820
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    |||| |||||||| ||||   ||||||||||| |||| |||| |||||||| ||||||| |||||||||| ||||    
T  54560894 tttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgtt 54560820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 50837538 - 50837591
Alignment:
Q  101 ccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||||| |||| |||| |||||||| ||||||| |||||||||| ||||    
T  50837538 ccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgtt 50837591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 11147803 - 11147877
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||||||| |||| | || ||||||||||||| |||| |||||||| ||||||| |||||||||| ||||    
T  11147803 tttaagaaacttcaaaaattcccttgaaattgtcaaacgttagtcaattacccccctccgtttgttttggctgtt 11147877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 620528 - 620602
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    |||| |||||||| |||||  ||||||||||| |||| |||| |||||||| ||||||| |||||||||| ||||    
T  620528 tttaggaaacttcaaaaacccccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgtt 620602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 621613 - 621539
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    |||| |||||||| |||||  ||||||||||| |||| |||| |||||||| ||||||| |||||||||| ||||    
T  621613 tttaggaaacttcaaaaacccccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgtt 621539  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 11148149 - 11148100
Alignment:
Q  104 tgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||||||| |||| |||||||| ||||||| |||||||||||||||    
T  11148149 tgaaattgtcaaatgttagtcaattac-cccctccgtttgttttggttgtt 11148100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 27455770 - 27455722
Alignment:
Q  101 ccctgaaattgtcaaaagttaatcaattactcccctccatttgttttgg 149  Q
    ||||||||||| |||| |||| |||||||| ||||||| ||||||||||    
T  27455770 ccctgaaattgccaaatgttagtcaattacccccctccgtttgttttgg 27455722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 2026 - 2101
Alignment:
Q  101 ccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtttacaccctatgacgtggcagtta 177  Q
    |||||||||||| ||| |||| |||||||| ||||||| | |||||||| || ||||||||| ||||||||||||||    
T  2026 ccctgaaattgttaaacgttagtcaattacccccctccgtctgttttggctg-ttacaccctgtgacgtggcagtta 2101  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 32390005 - 32390075
Alignment:
Q  101 ccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtttacaccctatgacgtggca 173  Q
    |||||||||||||||| |||| ||||||| |||||||||||| ||||||||| ||| ||| ||||||||||||    
T  32390005 ccctgaaattgtcaaacgttagtcaatta-tcccctccatttattttggttg-ttaaaccatatgacgtggca 32390075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 32390970 - 32390876
Alignment:
Q  77 acatttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtttacaccctatgacgtggca 173  Q
    ||||||||||||||| ||||| | |||||||||| ||||| |||| |||||||| ||||||| |||||||||  || ||| ||| ||||||||||||    
T  32390970 acatttaagaaactt-caaaaatcccctgaaattatcaaacgttagtcaattacccccctccgtttgttttgactg-ttaaaccatatgacgtggca 32390876  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 36068163 - 36068115
Alignment:
Q  101 ccctgaaattgtcaaaagttaatcaattactcccctccatttgttttgg 149  Q
    |||||||||||||||| |||| |||||||| ||||||| ||||||||||    
T  36068163 ccctgaaattgtcaaatgttagtcaattacccccctccgtttgttttgg 36068115  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 25635055 - 25634968
Alignment:
Q  77 acatttaagaaacttccaaaacttccc--tgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtttacaccctatgacg 168  Q
    |||||||||||||||| |||   ||||  ||||||||||||| ||||||| ||||  |||||||| |||||||||||| ||| |||||||||||    
T  25635055 acatttaagaaacttcaaaa---tccctttgaaattgtcaaacgttaatcgatta--cccctccacttgttttggttg-ttataccctatgacg 25634968  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 24240645 - 24240716
Alignment:
Q  101 ccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtttacaccctatgacgtggca 173  Q
    |||||||||||| ||| |||| |||||||| ||||||  | |||||||| || ||||||||| ||||||||||    
T  24240645 ccctgaaattgttaaatgttagtcaattacccccctctgtctgttttggctg-ttacaccctgtgacgtggca 24240716  T

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Target: scaffold0102 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 33222 - 33147
Alignment:
Q  80 tttaagaaacttccaaaa-cttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    |||| ||||||||||||| |  |||||||||||||||| |||| |||||||| ||||||| |||||||||| ||||    
T  33222 tttaggaaacttccaaaaacccccctgaaattgtcaaacgttagtcaattacccccctccgtttgttttggctgtt 33147  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 6009505 - 6009431
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||||||| |||||| |||||||||| ||||| |||| |||||||  || |||| |||||||||| ||||    
T  6009505 tttaagaaacttcaaaaactcccctgaaattatcaaacgttagtcaattatccctctccgtttgttttggctgtt 6009431  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 17732893 - 17732819
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||||||| |||||  |||||||||| ||||| ||||  ||||||| ||||||| |||||||||| ||||    
T  17732893 tttaagaaacttcaaaaacccccctgaaattatcaaacgttagccaattacccccctccgtttgttttggctgtt 17732819  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 15347490 - 15347565
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccc-tccatttgttttggttgtt 154  Q
    ||||||||||||| |||||  |||||||||| ||||| |||| |||||||| |||| ||| |||||||||| ||||    
T  15347490 tttaagaaacttcaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgtt 15347565  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 6008699 - 6008773
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    |||| |||||||| ||||   ||||||||||| |||| |||| ||||| || |||||||||||||||||| ||||    
T  6008699 tttaggaaacttcaaaaagccccctgaaattgacaaacgttagtcaatcacccccctccatttgttttggctgtt 6008773  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 17732094 - 17732147
Alignment:
Q  101 ccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||||| |||| |||| |||||||| ||||||| |||||||||| ||||    
T  17732094 ccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgtt 17732147  T

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Target: scaffold0380 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 7591 - 7521
Alignment:
Q  105 gaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtttacaccctatgacgtggcagtta 177  Q
    |||||||||||| |||||| |||||| ||||||| |||||||| |||||| || ||||||||| |||||||||    
T  7591 gaaattgtcaaatgttaattaattac-cccctccgtttgtttttgttgttaac-ccctatgacttggcagtta 7521  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 14790730 - 14790805
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccc-tccatttgttttggttgtt 154  Q
    ||||||||||||| |||||  |||||||||| ||||| |||| |||||||| |||| ||| |||||||||| ||||    
T  14790730 tttaagaaacttcaaaaacccccctgaaattatcaaacgttagtcaattaccccccttccgtttgttttggctgtt 14790805  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 14791531 - 14791457
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    |||| |||||||| ||||   ||||||||||| |||| |||| |||||||| ||||||| |||||||||| ||||    
T  14791531 tttaggaaacttcaaaaaaccccctgaaattgacaaacgttagtcaattacccccctccgtttgttttggctgtt 14791457  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 20112353 - 20112280
Alignment:
Q  80 tttaagaaacttccaaaacttccctgaaattgtcaaaagttaatcaattactcccctccatttgttttggttgtt 154  Q
    ||||||||||||| |||||  | |||||||| ||||| |||| |||||||| ||||||| |||||||||| ||||    
T  20112353 tttaagaaacttcaaaaaccccactgaaattatcaaacgttagtcaattac-cccctccgtttgttttggctgtt 20112280  T

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