View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_high_84 (Length: 226)
Name: NF1254_high_84
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_high_84 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 1245884 - 1246080
Alignment:
| Q |
1 |
ccttccaggtgagactcctttgtgaaatttgttctaattttgtgagagtagcatgttgatttatgtgagagtagagttctatgctatcagatttttgtct |
100 |
Q |
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| T |
1245884 |
ccttccaggtgagactcctttgtgaaatttgttctaattttgtgagagtagcatgttgatttatgtgagagtagagttctatgctatcagatttttgtct |
1245983 |
T |
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| Q |
101 |
tcatcatagagtatgagggaaatgaattttgaaatatcagtagtttggtaacaaattcaggttgaatgttgcagtagattattgttgctgaattttg |
197 |
Q |
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| T |
1245984 |
tcatcatagagtatgagggaaatgaattttgaaatatcagtagtttggtaacaaattcaggttgaatgttgcagtagattattgttgctgaattttg |
1246080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 42010546 - 42010742
Alignment:
| Q |
1 |
ccttccaggtgagactcctttgtgaaatttgttctaattttgtgagagtagcatgttgatttatgtgagagtagagttctatgctatcagatttttgtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42010546 |
ccttccaggtgagactcctttgtgaaatttgttctaattttgtgagagtagcatgttgatttatgtgagagtagagttttatgctatcagatttttgtct |
42010645 |
T |
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| Q |
101 |
tcatcatagagtatgagggaaatgaattttgaaatatcagtagtttggtaacaaattcaggttgaatgttgcagtagattattgttgctgaattttg |
197 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42010646 |
tcatcatagagtatgagggaaatgatttttgaaatatcagtagtttggtaacaaattcagattgaatgttgcagtagattattgttgctgaattttg |
42010742 |
T |
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