View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_1 (Length: 1014)
Name: NF1254_low_1
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 73 - 619
Target Start/End: Original strand, 28127333 - 28127879
Alignment:
| Q |
73 |
tcataggatgatataatggtaaaaaataataaggtacacataagtgataactaaatatgtgatattgtacttgtattaatcaaatccacaatcaccagaa |
172 |
Q |
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| T |
28127333 |
tcataggatgacataatggtaaaaaataataaagtacacataagtgataactaaatatgtgatattgtacttgtattaatcaaatccacaatcaccagaa |
28127432 |
T |
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| Q |
173 |
atccatcagtcaagtctaggtcctaatattatccttaaatttcttcgtatgaatgaaaagcgactaagcgaggggtggcttccttgccctggtagcttgc |
272 |
Q |
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| T |
28127433 |
atccatcagtcaagtctaggtcctaatattatccttaaatttcttcgtatgaatgaaaagcgactaagcgaggggtggcttccttgccctggtagcttgc |
28127532 |
T |
|
| Q |
273 |
tcaaaatcataagcaatctcaatcagtttcggctcagttccctttaaccctccaaaacagattccaaatggcatcccttgcttatcatatccagctggga |
372 |
Q |
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| T |
28127533 |
tcaaaatcataagcaatctcaatcagtttcggctcagttccctttaaccctccaaaacagattccaaatggcatcccttgcttatcatatccagctggga |
28127632 |
T |
|
| Q |
373 |
cagtgattgctggataccctccaattgccaacattggagaagcatcagagcctatggccaacactgcatccaattgattcttctttatcaaactctcaaa |
472 |
Q |
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| T |
28127633 |
cagtgattgctggataccctccaattgccaacattggagaagcatcagagcctatggccaacactgcatccaattgattcttctttatcaaactctcaaa |
28127732 |
T |
|
| Q |
473 |
accatcttttgacaattgatccatcatcttcagtgcctcaatttcactttttccaaatccgctcgtcatttctgaagcaataaataaatcttgcccatat |
572 |
Q |
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| T |
28127733 |
cccatcttttgacaattgatccatcatcttcagtgcctcaatttcactttttccgaatccgctcgtcatttctgaagcaataaataaatcttgcccatat |
28127832 |
T |
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| Q |
573 |
tcattagtcttttcctgttacaagaaaaccataaaacatattcatta |
619 |
Q |
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| T |
28127833 |
tcattagtcttttcctgttacaagaaaaccataaaacatattcatta |
28127879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 773 - 986
Target Start/End: Original strand, 28127879 - 28128092
Alignment:
| Q |
773 |
atgtgtattgtcagtatcatatagcaaaatcctttgttgtaagttcttttcatatgctttccaaatgatacaaagcatttatgtcatattagtatcttat |
872 |
Q |
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| T |
28127879 |
atgtgtattgtcagtatcatatagcaaaatcctttgttgtaagttcttttcatatgctttccaaatgatacaaagcatttatgtcatattagtatcttat |
28127978 |
T |
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| Q |
873 |
gcataatgcataatagagatagtttagataaaatttgaaaacataaatgataatattcaaaattataatttccatgaggtttctccagctatttgaccat |
972 |
Q |
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| T |
28127979 |
gcataatgcataatagagatagtttagataaaatttgaaaacataaatgataatattcaaaattataatttccatgaggtttctccagctatttgaccat |
28128078 |
T |
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| Q |
973 |
ttaaaattaaaagt |
986 |
Q |
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| T |
28128079 |
ttaaaattaaaagt |
28128092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 279 - 607
Target Start/End: Original strand, 28109013 - 28109341
Alignment:
| Q |
279 |
tcataagcaatctcaatcagtttcggctcagttccctttaaccctccaaaacagattccaaatggcatcccttgcttatcatatccagctgggacagtga |
378 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| || ||||| ||||||| |
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| T |
28109013 |
tcataagcaatctcaatcagttttggctcagttccctttaaccctccaaaacagatcccaaatggcattccttgcctatcataccctgctggtacagtga |
28109112 |
T |
|
| Q |
379 |
ttgctggataccctccaattgccaacattggagaagcatcagagcctatggccaacactgcatccaattgattcttctttatcaaactctcaaaaccatc |
478 |
Q |
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| T |
28109113 |
ttgcaggataccctccaattgacagcattgaagtagcatcagaacctatggccaacactgcatccaattgattcttcttaatcagcctctcaaccccatt |
28109212 |
T |
|
| Q |
479 |
ttttgacaattgatccatcatcttcagtgcctcaatttcactttttccaaatccgctcgtcatttctgaagcaataaataaatcttgcccatattcatta |
578 |
Q |
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|||||||||||| |||||| |||||| |||||| |||||||||| ||||| || || ||||||||||| || ||||| |||||||||||||| |||||| |
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| T |
28109213 |
ttttgacaattgctccatcttcttcactgcctcgatttcactttcgccaaagccactggtcatttctgatgccataaagaaatcttgcccatactcatta |
28109312 |
T |
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| Q |
579 |
gtcttttcctgttacaagaaaaccataaa |
607 |
Q |
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| T |
28109313 |
gtcttttcctgttacaagaaaaccataaa |
28109341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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