View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_108 (Length: 212)
Name: NF1254_low_108
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_108 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 1245898 - 1246080
Alignment:
| Q |
1 |
ctcctttgtgaaatttgttctaattttgtgagagtagcatgttgatttatgtgagagtagagttctatgctatcagatttttgtcttcatcatagagtat |
100 |
Q |
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| T |
1245898 |
ctcctttgtgaaatttgttctaattttgtgagagtagcatgttgatttatgtgagagtagagttctatgctatcagatttttgtcttcatcatagagtat |
1245997 |
T |
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| Q |
101 |
gagggaaatgaattttgaaatatcagtagtttggtaacaaattcaggttgaatgttgcagtagattattgttgctgaattttg |
183 |
Q |
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| T |
1245998 |
gagggaaatgaattttgaaatatcagtagtttggtaacaaattcaggttgaatgttgcagtagattattgttgctgaattttg |
1246080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 42010560 - 42010742
Alignment:
| Q |
1 |
ctcctttgtgaaatttgttctaattttgtgagagtagcatgttgatttatgtgagagtagagttctatgctatcagatttttgtcttcatcatagagtat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42010560 |
ctcctttgtgaaatttgttctaattttgtgagagtagcatgttgatttatgtgagagtagagttttatgctatcagatttttgtcttcatcatagagtat |
42010659 |
T |
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| Q |
101 |
gagggaaatgaattttgaaatatcagtagtttggtaacaaattcaggttgaatgttgcagtagattattgttgctgaattttg |
183 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42010660 |
gagggaaatgatttttgaaatatcagtagtttggtaacaaattcagattgaatgttgcagtagattattgttgctgaattttg |
42010742 |
T |
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