View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_13 (Length: 502)
Name: NF1254_low_13
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 30 - 490
Target Start/End: Original strand, 4863355 - 4863812
Alignment:
| Q |
30 |
ttaaggagtgtcaatcaaaggctagagggatcccttacacaaagaaaaagaagaagaggagtcaacttaagggcactcataatactacttctaagtcttt |
129 |
Q |
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| T |
4863355 |
ttaaggagtgtcaatcaaaggctagagggatcccttacacaaagaaaaagaagaagaggagtcaacttaagggcactcataatactacttctaagtcttt |
4863454 |
T |
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| Q |
130 |
caaccaattagcttcttgagattcatggt-aannnnnnnnatcaaattaattaatatttgtatgccttaattagtttgaatttaaatgcaattagcttga |
228 |
Q |
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| T |
4863455 |
caaccaattagcttcttgagattcatggtaaattttttttatcaaattaattaatatttgtatgccttaattagtttgaatttaaatgcaattagcttga |
4863554 |
T |
|
| Q |
229 |
atttaattaagttatatcaggatcaagataaggtatggttgaaaattttgaagccgnnnnnnnaaacttgagggtaannnnnnnngccatatatatggag |
328 |
Q |
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| T |
4863555 |
atttaattaagttatatcaggatcaagataaggtatggttgaaaattttgaagccgtttttttaaacttgagggtaattttttttgcc----atatggag |
4863650 |
T |
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| Q |
329 |
atacacagatattggagtatagaaaaccctagaagcagaatacaaaccctaaaattttatttnnnnnnnnnnnngaatacaaaccctaaattcccattgt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4863651 |
atacacagatattggagtatagaaaaccctagaagcagaatacaaaccctaaaattttatttaaaaaacaaaaggaatacaaaccctaaattcccattgt |
4863750 |
T |
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| Q |
429 |
caattgagaaaatataaatttctagtgtaagaataatttattggttaaaaaattgtgagaat |
490 |
Q |
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| T |
4863751 |
caattgagaaaatataaatttctagagtaagaataatttattggttaaaaatttgtgagaat |
4863812 |
T |
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