View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_27 (Length: 447)
Name: NF1254_low_27
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 92 - 359
Target Start/End: Complemental strand, 6722936 - 6722677
Alignment:
| Q |
92 |
agagaaactaagatatgatcactaaattaacaaaaacaaatatgtatgtttcaaaatcatgttgtccagtctctttcaagattttgaaatcaaaagtacc |
191 |
Q |
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| T |
6722936 |
agagaaaccaagatatgatcactaaattaacaaaaacaaatatgtatgtttcaaaatcatgtttttcagtctctttcaagattttgaaatcaaaagtacc |
6722837 |
T |
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| Q |
192 |
aatttttcagagagaaaccaagagtacgaagagtgaattagatgattagatgattacgaagagtgagaacagtgaatgaaatcaaaaataacaattttat |
291 |
Q |
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| T |
6722836 |
aatttttcagagagaaaccaagagtacgaagagtga--------atgagatgattacgaagagtgggaatagtgaatgaaatcaaaaataacaattttat |
6722745 |
T |
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| Q |
292 |
acaggcaaagaaacatgcattgtttcaatgtttccacatgcatgaattagagcaaaacattatgggta |
359 |
Q |
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| T |
6722744 |
ataggcaaagaaacatgcattgtttcaatgtttccacatgcatgaattagagcaaaacattatgggta |
6722677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 45548718 - 45548637
Alignment:
| Q |
7 |
tcgaagaatatgatgttataagggatacagaaaagcatatccttagtatacttctggatgagatcgccaaggaatattgcac |
88 |
Q |
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| T |
45548718 |
tcgaaaaatatgatgttataagggatacagaaaagcatatccttagtatacttctggatgagatcgccaaagaatattgcac |
45548637 |
T |
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