View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_3 (Length: 690)
Name: NF1254_low_3
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 84 - 594
Target Start/End: Complemental strand, 40095053 - 40094546
Alignment:
| Q |
84 |
tattctaattgaagaaaaataaattgggatgttcctagaatacaattctaatttggaaagggaagaagaatttaagataagagttgaacacaattgatga |
183 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40095053 |
tattctaattgaagaaaaataaattgggatgttcctagaatacaattctaatttggaaagggaagaagaatttaagataagagttgaagacaattgatga |
40094954 |
T |
|
| Q |
184 |
ctgctcttggttggagcaacatgttacatgtttgtctatgcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaatgtat |
283 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094953 |
ctgctcttgg----agcaacatgttacatgtttgtctatgcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaatgtat |
40094858 |
T |
|
| Q |
284 |
cagttgatactccaatactacaacttcttgatccaatgcaggcctgttaataagatgattttagtatgttacaacaatcaggttcaaaagaaaacacaaa |
383 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094857 |
cggttgatactccaatactacaacttcttgatccaatgcaggcctgttaataagatgattttagtatgttacaacaatcaggttcaaaagaaaacacaaa |
40094758 |
T |
|
| Q |
384 |
caaataacac-gagattgtcccgtaagtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaattctcca |
482 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094757 |
caaataacactgagattgtcccgtaagtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaattctcca |
40094658 |
T |
|
| Q |
483 |
cttctcagtatataatgtgtgtgtgagtttcgccactaaccagcttaaaaccaacagcaacaacnnnnnnncaagatttgatcgtggagttcggccaatt |
582 |
Q |
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| T |
40094657 |
cttctcagtacataatgtgtgtgtgagtttcgccgctaaccagcttaaaaccaacagcaacaacaaaaaaacaagatttgatcgcggagttcggccaatt |
40094558 |
T |
|
| Q |
583 |
gtgtatacatct |
594 |
Q |
| |
|
|||||||||||| |
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|
| T |
40094557 |
gtgtatacatct |
40094546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 84 - 485
Target Start/End: Complemental strand, 40082814 - 40082402
Alignment:
| Q |
84 |
tattctaattgaagaaaaataaattgggatgttcctagaatacaattctaatttggaaagggaagaagaatttaagataagagttgaacacaattgatga |
183 |
Q |
| |
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|||||||| |||| || || |||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||| || |
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| T |
40082814 |
tattctaagtgaaaaataaaaaattgggatgttcctagaatacaattctaatttagatagggaagatgaattgaagataagagttgaacacaattgagga |
40082715 |
T |
|
| Q |
184 |
ctgctcttggttggagcaacatgttacatgtttgtctatgcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaatgtat |
283 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||| ||||||||||||||||||||| |
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| T |
40082714 |
ctgctcttag----agcaacatgttacatgtttgtctatgcacaagtagcttcaacagctaaacttttcggtactcctctacaagggtctccaaatgtat |
40082619 |
T |
|
| Q |
284 |
cagttgatactccaatactacaacttcttgatccaatgcaggcctgttaataagatgattttagtatgttacaacaa-tcaggttcaaaaga-------- |
374 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
40082618 |
cagttgatactccaacactacaacttcttgatccaatgcaggcctgttaataagatgattttagtatgttacaacaactctggttcaaaagacaacagat |
40082519 |
T |
|
| Q |
375 |
-----aaacacaaacaaataacac--gagattgtcccgtaagtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttga |
467 |
Q |
| |
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|||| ||||||| ||||| | ||||||||||||||||||||||| ||||||||| || || |||||||||||||| || | | || |||| |
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| T |
40082518 |
atgataaacggaaacaaagaacacaagtgattgtcccgtaagtacaactcatatggtaaaaggatgtgggaacatttgatatgttagagctc-gggttga |
40082420 |
T |
|
| Q |
468 |
acccacaattctccactt |
485 |
Q |
| |
|
|||||||||||||||||| |
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| T |
40082419 |
acccacaattctccactt |
40082402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 223 - 357
Target Start/End: Complemental strand, 40063989 - 40063855
Alignment:
| Q |
223 |
gcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaatgtatcagttgatactccaatactacaacttcttgatccaatgc |
322 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40063989 |
gcacaagtagcttcaacagctaaactctttggcactcctctacaagggtctccaaatgtatcggttgatactccaatactacaacttcttgatccaatgc |
40063890 |
T |
|
| Q |
323 |
aggcctgttaataagatgattttagtatgttacaa |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
40063889 |
aggcctgttaataagatgattttagtatgttacaa |
40063855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 482
Target Start/End: Original strand, 15091280 - 15091357
Alignment:
| Q |
405 |
gtaagtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaattctcca |
482 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||| ||||||||||||||||| || |||||||| |||||||||||| |
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|
| T |
15091280 |
gtaaatacatctcagatggtaaaatattgcaaagacatttgatatgttggggcgtgagtttgaactcacaattctcca |
15091357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 13986687 - 13986642
Alignment:
| Q |
460 |
aggtttgaacccacaattctccacttctcagtatataatgtgtgtg |
505 |
Q |
| |
|
||||||||| |||||||| |||||||||||| || ||||||||||| |
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| T |
13986687 |
aggtttgaatccacaattatccacttctcagcatttaatgtgtgtg |
13986642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 13992585 - 13992540
Alignment:
| Q |
460 |
aggtttgaacccacaattctccacttctcagtatataatgtgtgtg |
505 |
Q |
| |
|
||||||||| |||||||| |||||||||||| || ||||||||||| |
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|
| T |
13992585 |
aggtttgaatccacaattatccacttctcagcatttaatgtgtgtg |
13992540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 330
Target Start/End: Original strand, 22011868 - 22011979
Alignment:
| Q |
219 |
ctatgcacaagtagcttcaacggctaaactctttggcactcctttacaagggtctccaaatgtatcagttgatactccaatactacaacttcttgatcca |
318 |
Q |
| |
|
||||| ||||| ||||||||| ||||| ||||||| |||||| || || | ||||||||||| | |||||||||||||| ||||||| || |||||| |
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|
| T |
22011868 |
ctatgtacaagcagcttcaacagctaagctctttgttactcctcggcatggatttccaaatgtattaattgatactccaatattacaactgctcgatcca |
22011967 |
T |
|
| Q |
319 |
atgcaggcctgt |
330 |
Q |
| |
|
|||||||||||| |
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|
| T |
22011968 |
atgcaggcctgt |
22011979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 489
Target Start/End: Complemental strand, 39535522 - 39535438
Alignment:
| Q |
405 |
gtaagtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaattctccacttctca |
489 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| | | |||||||||||||| | ||||||| | ||| ||||||||||| ||||| |
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|
| T |
39535522 |
gtaagtacaactcaaatggtaaaatgttgcatgaatatttgatatgttgggatgcaggttcggacctgcaattctccacgtctca |
39535438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 490
Target Start/End: Complemental strand, 35195051 - 35194969
Alignment:
| Q |
408 |
agtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaattctccacttctcag |
490 |
Q |
| |
|
|||| ||||||||||||||| | ||||| | |||||||||||||||| | ||||||||||| ||||||||||||||||| |
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|
| T |
35195051 |
agtataactcagatggtaaattgttgcatgaacatttgatatgttggggtgagggtttgaacccgtaattctccacttctcag |
35194969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 477
Target Start/End: Complemental strand, 9438257 - 9438188
Alignment:
| Q |
408 |
agtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaatt |
477 |
Q |
| |
|
||||||||||||||| ||||| |||| | |||||||||||||| |||||||||||| ||| ||||||| |
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|
| T |
9438257 |
agtacaactcagatgataaaagactgcatgaacatttgatatgttagaacgcaggtttcaacgcacaatt |
9438188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 450
Target Start/End: Original strand, 30524191 - 30524236
Alignment:
| Q |
405 |
gtaagtacaactcagatggtaaaattttgcagggacatttgatatg |
450 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
30524191 |
gtaagtacaactcagatgataaatagttgcagggacatttgatatg |
30524236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 408 - 452
Target Start/End: Original strand, 7326607 - 7326651
Alignment:
| Q |
408 |
agtacaactcagatggtaaaattttgcagggacatttgatatgtt |
452 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||||||| |
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|
| T |
7326607 |
agtacaactcatatggtaaaaggttgcatggacatttgatatgtt |
7326651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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