View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1254_low_30 (Length: 425)
Name: NF1254_low_30
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_30 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 28 - 425
Target Start/End: Original strand, 37663120 - 37663517
Alignment:
| Q |
28 |
agatgcaatcctagaacaagtaaaaccaatttaatatgtacgcctagtttttcactttgatagtttatgaattttatttggtgttatttgatctaaaaaa |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37663120 |
agatgcaatcctagaacaagtaaaaccaatttaatatgtacgcctagtttttcactttgatagtttatgaattttatttggtgttatttgatctaaaaaa |
37663219 |
T |
|
| Q |
128 |
tatatgctctatagttgctacttttgagaagtgtgttctttcttatgcttgcttcaaatgnnnnnnnnn-ccttccaacaattatgtccctgtgaccctg |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
37663220 |
tatatgctctatagttgctacttttgagaagtgtgttctttcttatgcttgcttcaaatttattttttttccttccaacaattatgtccctgtgaccttg |
37663319 |
T |
|
| Q |
227 |
tgttatgtgcagtatgagagtttgggacctgataggggatttatttactatatctttgaggaatttcatgaaatcaaataaactgggtgaagaacactag |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37663320 |
tgttatgtgcagtatgagagtttgggacctgataggggatttatttactatatctttggggaatttcatgaaatcaaataaactgggtgaagaacactag |
37663419 |
T |
|
| Q |
327 |
ttgtgaagaaaaaatatctgtttttattgcaaagaaataaaaatgcatttttctcaaataattatagatcattattggttgtgttcaaatgtttgacca |
425 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37663420 |
ttgtgaag-aaaaatatttgtttttattgcaaagaaataaaaatgcatttttctcaaataattatagatcattattggttgtgttcaaatgtttgacca |
37663517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University