View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_31 (Length: 423)
Name: NF1254_low_31
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 99 - 412
Target Start/End: Original strand, 259312 - 259624
Alignment:
| Q |
99 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnnngtttatttctgacatataaagaattgttgagc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
259312 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttaaaaaaaaa--gtttatttctgacatataaagaattgttgagc |
259409 |
T |
|
| Q |
199 |
cctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
259410 |
cctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataa |
259509 |
T |
|
| Q |
299 |
atattgatatttgactaatttgtcatttacatccatcgacctaattctctctatttgactattttttcaaatgcaaacaat-aactcattgcatttgttg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
259510 |
atattgatatttgactaatttgtcatttacatccatcgacttaattctctctatttgactattttttcaaatgcaaacaataaactcattgcatttgttg |
259609 |
T |
|
| Q |
398 |
tacacttctgcctat |
412 |
Q |
| |
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||||| ||||||||| |
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| T |
259610 |
tacacgtctgcctat |
259624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 99 - 412
Target Start/End: Complemental strand, 656609 - 656297
Alignment:
| Q |
99 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnnngtttatttctgacatataaagaattgttgagc |
198 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
656609 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttaaaaaaaaa--gtttatttctgacatataaagaattgttgagc |
656512 |
T |
|
| Q |
199 |
cctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
656511 |
cctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataa |
656412 |
T |
|
| Q |
299 |
atattgatatttgactaatttgtcatttacatccatcgacctaattctctctatttgactattttttcaaatgcaaacaat-aactcattgcatttgttg |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
656411 |
atattgatatttgactaatttgtcatttacatccatcgacttaattctctctatttgactattttttcaaatgcaaacaataaactcattgcatttgttg |
656312 |
T |
|
| Q |
398 |
tacacttctgcctat |
412 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
656311 |
tacacgtctgcctat |
656297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 99 - 412
Target Start/End: Complemental strand, 842344 - 842032
Alignment:
| Q |
99 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnnngtttatttctgacatataaagaattgttgagc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
842344 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttaaaaaaaaa--gtttatttctgacatataaagaattgttgagc |
842247 |
T |
|
| Q |
199 |
cctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
842246 |
cctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataa |
842147 |
T |
|
| Q |
299 |
atattgatatttgactaatttgtcatttacatccatcgacctaattctctctatttgactattttttcaaatgcaaacaat-aactcattgcatttgttg |
397 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
842146 |
atattgatatttgactaatttgtcatttacatccatcgacttaattctctctatttgactattttttcaaatgcaaacaataaactcattgcatttgttg |
842047 |
T |
|
| Q |
398 |
tacacttctgcctat |
412 |
Q |
| |
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||||| ||||||||| |
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|
| T |
842046 |
tacacgtctgcctat |
842032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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