View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_35 (Length: 418)
Name: NF1254_low_35
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 97 - 409
Target Start/End: Complemental strand, 26887345 - 26887033
Alignment:
| Q |
97 |
gctctttgatccttccaccattagaatcaagtttttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatgacatttctt |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887345 |
gctctttgatccttccaccattagaatcaagtctttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatgacatttctt |
26887246 |
T |
|
| Q |
197 |
ttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttcttgagctgcaagttaagata |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887245 |
ttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttcttgagctgcaagttaagata |
26887146 |
T |
|
| Q |
297 |
aaaacattagaaaacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacataattaagtttgtccaataacttgctag |
396 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26887145 |
aaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaattaagtttgtccaataacttgctag |
26887046 |
T |
|
| Q |
397 |
atctggtctctgc |
409 |
Q |
| |
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||||||||||||| |
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| T |
26887045 |
atctggtctctgc |
26887033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 97 - 409
Target Start/End: Original strand, 51855079 - 51855391
Alignment:
| Q |
97 |
gctctttgatccttccaccattagaatcaagtttttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatgacatttctt |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855079 |
gctctttgatccttccaccattagaatcaagtctttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatgacatttctt |
51855178 |
T |
|
| Q |
197 |
ttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttcttgagctgcaagttaagata |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51855179 |
ttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttatccaaaattgttcttgagctgcaagttaagata |
51855278 |
T |
|
| Q |
297 |
aaaacattagaaaacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacataattaagtttgtccaataacttgctag |
396 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51855279 |
aaaacaaaagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaattaagtttgtccaataacttgctag |
51855378 |
T |
|
| Q |
397 |
atctggtctctgc |
409 |
Q |
| |
|
||||| ||||||| |
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|
| T |
51855379 |
atctgatctctgc |
51855391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 115 - 409
Target Start/End: Complemental strand, 35043384 - 35043090
Alignment:
| Q |
115 |
cattagaatcaagtttttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatgacatttcttttccatggccttcttatc |
214 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
35043384 |
cattagaattaagtctttcttcatggctcctaaatagagcatcagtatagtgtgcaagatgaaaatgagtttgacatttcttttccatggccttcttatc |
35043285 |
T |
|
| Q |
215 |
tgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttcttgagctgcaagttaagataaaaacattagaaaacatg |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
35043284 |
tgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttctccaaaattgttcttgagctgcaagttaagataaaaacaggagaagacatg |
35043185 |
T |
|
| Q |
315 |
aactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacataattaagtttgtccaataacttgctagatctggtctctgc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
35043184 |
aactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaattcagtttgtccaataacttgctagatctggtctctgc |
35043090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 97 - 409
Target Start/End: Original strand, 8944314 - 8944626
Alignment:
| Q |
97 |
gctctttgatccttccaccattagaatcaagtttttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatgacatttctt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
8944314 |
gctctttgatccttccaccattagaatcaagtatttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtattacatttctt |
8944413 |
T |
|
| Q |
197 |
ttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttcttgagctgcaagttaagata |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
8944414 |
ttccatggccttcttatctgtacttttcacatcctcagcaatagaaactgtaggtttcaaatacttctccaaaattgttcttgagctgcaagttaagata |
8944513 |
T |
|
| Q |
297 |
aaaacattagaaaacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacataattaagtttgtccaataacttgctag |
396 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8944514 |
aaaacattagaagacatgaactcaaatgagtcaggcatcacaggggagcatccattatttaaacattaaacagaattaagtttgtccaataacttgctac |
8944613 |
T |
|
| Q |
397 |
atctggtctctgc |
409 |
Q |
| |
|
||||||||||||| |
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|
| T |
8944614 |
atctggtctctgc |
8944626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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