View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_40 (Length: 402)
Name: NF1254_low_40
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_40 |
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| [»] scaffold0491 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 30 - 394
Target Start/End: Complemental strand, 1110706 - 1110341
Alignment:
| Q |
30 |
gtttatatggtgggttttaggccttctgccatcgacaacactgatttgattggnnnnnnnnnn-cactatattgtgatccgtgattgacaacagtagttt |
128 |
Q |
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|||||||||||||||||| ||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
1110706 |
gtttatatggtgggtttttggccttctgccattgacagcactgatttgattgaagaaaaaaaaacactatattgtgatccatgattgacaacagtagttt |
1110607 |
T |
|
| Q |
129 |
atattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctcttatgatgtatgtattggacttcttagtacgt |
228 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1110606 |
atattggacatttgtacttgctcgtttgatgcaatagtaatatattcaacttatagcattcactgctcttatgatgtatgtattggacttcttggtacgt |
1110507 |
T |
|
| Q |
229 |
atatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatttagttctaagtgttgtcaaatagca |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| |
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| T |
1110506 |
atatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaatagca |
1110407 |
T |
|
| Q |
329 |
actataacagcgacgtgccactatagcatagaggaatttaaaggtttcaacgaattgatattattc |
394 |
Q |
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| T |
1110406 |
actataacagcgacgtgccactatagcatagaggaatttaaaggtttcaatgaattgatattattc |
1110341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 112 - 394
Target Start/End: Original strand, 4241 - 4519
Alignment:
| Q |
112 |
attgacaacagtagtttatattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctctt-atgatgtatgta |
210 |
Q |
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|||||||||||| || ||||||| ||| |||||||| || |||| | |||||||| |||| ||||||| |||||||||||||||| ||| ||| |||| |
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| T |
4241 |
attgacaacagtggtctatattgcacacttgtacttgctagtttaaaacaatagtagtatactcaactttaagcattcactgctcttgatgttgtctgta |
4340 |
T |
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| Q |
211 |
ttggacttcttagtacg-tatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatttagttc |
309 |
Q |
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| ||||||| | || | |||||| | |||||||||||||| ||| |||||||||||||||||||||||||||| || | ||||||||||||| |
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| T |
4341 |
cttgacttctcaatatggtatatcggtgttgtcaaatagcaat------gttccgaaatttgaacaaattgctattgtttcgggatatgctatttagttc |
4434 |
T |
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| Q |
310 |
taagtgttgtcaaatagcaactataacagcgacgtgccactatagcatagaggaatttaaaggtttcaacgaattgatattattc |
394 |
Q |
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||||||| | ||||| |||||||||| ||||| | |||||||||| | | ||||||||||||||| || ||||| |||||||| |
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| T |
4435 |
taagtgtggccaaatgtcaactataacggcgacataccactatagcgttgtggaatttaaaggtttaaataaattggtattattc |
4519 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 112 - 394
Target Start/End: Original strand, 18737542 - 18737820
Alignment:
| Q |
112 |
attgacaacagtagtttatattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctctt-atgatgtatgta |
210 |
Q |
| |
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|||||||||||| || ||||||| ||| |||||||| || |||| | |||||||| |||| ||||||| |||||||||||||||| ||| ||| |||| |
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| T |
18737542 |
attgacaacagtggtctatattgcacacttgtacttgctagtttaaaacaatagtagtatactcaactttaagcattcactgctcttgatgttgtctgta |
18737641 |
T |
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| Q |
211 |
ttggacttcttagtacg-tatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatttagttc |
309 |
Q |
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| ||||||| | || | |||||| | |||||||||||||| ||| |||||||||||||||||||||||||||| || | ||||||||||||| |
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| T |
18737642 |
cttgacttctcaatatggtatatcggtgttgtcaaatagcaat------gttccgaaatttgaacaaattgctattgtttcgggatatgctatttagttc |
18737735 |
T |
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| Q |
310 |
taagtgttgtcaaatagcaactataacagcgacgtgccactatagcatagaggaatttaaaggtttcaacgaattgatattattc |
394 |
Q |
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||||||| | ||||| |||||||||| ||||| | |||||||||| | | ||||||||||||||| || ||||| |||||||| |
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| T |
18737736 |
taagtgtggccaaatgtcaactataacggcgacataccactatagcgttgtggaatttaaaggtttaaaaaaattggtattattc |
18737820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 112 - 394
Target Start/End: Original strand, 18747400 - 18747678
Alignment:
| Q |
112 |
attgacaacagtagtttatattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctctt-atgatgtatgta |
210 |
Q |
| |
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|||||||||||| || ||||||| ||| |||||||| || |||| | |||||||| |||| ||||||| |||||||||||||||| ||| ||| |||| |
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| T |
18747400 |
attgacaacagtggtctatattgcacacttgtacttgctagtttaaaacaatagtagtatactcaactttaagcattcactgctcttgatgttgtctgta |
18747499 |
T |
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| Q |
211 |
ttggacttcttagtacg-tatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatttagttc |
309 |
Q |
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| ||||||| |||| | |||||| | |||||||||||||| ||| |||||||||||||||||||||| ||||| || | ||||||||||||| |
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| T |
18747500 |
cttgacttctcagtatggtatatcggtgttgtcaaatagcaat------gttccgaaatttgaacaaattgctatagtttcgggatatgctatttagttc |
18747593 |
T |
|
| Q |
310 |
taagtgttgtcaaatagcaactataacagcgacgtgccactatagcatagaggaatttaaaggtttcaacgaattgatattattc |
394 |
Q |
| |
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||||||| | ||||| |||||||||| ||||| | |||||||||| | | ||||||||||||||| || ||||| |||||||| |
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| T |
18747594 |
taagtgtggccaaatgtcaactataacggcgacataccactatagcgttgtggaatttaaaggtttaaataaattggtattattc |
18747678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 112 - 394
Target Start/End: Original strand, 18742436 - 18742714
Alignment:
| Q |
112 |
attgacaacagtagtttatattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctctt-atgatgtatgta |
210 |
Q |
| |
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|||||||||||| || ||||||| ||| |||||||| || |||| | |||||||| |||| ||||||| |||||||||||||||| ||| ||| |||| |
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| T |
18742436 |
attgacaacagtggtctatattgcacacttgtacttgctagtttaaaacaatagtagtatactcaactttaagcattcactgctcttgatgttgtctgta |
18742535 |
T |
|
| Q |
211 |
ttggacttcttagtacg-tatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatttagttc |
309 |
Q |
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| ||||||| |||| | |||||| | |||||||||||||| ||| | |||||||||||||||||||| ||||| || | ||||||||||||| |
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| T |
18742536 |
cttgacttctcagtatggtatatcggtgttgtcaaatagcaat------gttcccaaatttgaacaaattgctatagtttcgggatatgctatttagttc |
18742629 |
T |
|
| Q |
310 |
taagtgttgtcaaatagcaactataacagcgacgtgccactatagcatagaggaatttaaaggtttcaacgaattgatattattc |
394 |
Q |
| |
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||||||| | ||||| |||||||||| ||||| | |||||||||| | | ||||||||||||||| || ||||| |||||||| |
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|
| T |
18742630 |
taagtgtggccaaatgtcaactataacggcgacataccactatagcgttgtggaatttaaaggtttaaataaattggtattattc |
18742714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 18737475 - 18737512
Alignment:
| Q |
44 |
ttttaggccttctgccatcgacaacactgatttgattg |
81 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||| |
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| T |
18737475 |
tttttggccttctgccatcgacaacactgattttattg |
18737512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 35199588 - 35199643
Alignment:
| Q |
274 |
caaattgctattgtttcagggtttgctatttagttctaagtgttgtcaaatagcaa |
329 |
Q |
| |
|
|||||||||||||||||| | | || ||||||||| ||||||||||||||||||| |
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|
| T |
35199588 |
caaattgctattgtttcacgatacgcgatttagttcaaagtgttgtcaaatagcaa |
35199643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 2732934 - 2733004
Alignment:
| Q |
264 |
gaaatttgaacaaattgctattgtttcagggtttgctatttagttctaagtgttgtcaaatagcaactata |
334 |
Q |
| |
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||||||||||||||| |||||||||| | | ||||||||||| | || ||||||||||||||| ||||| |
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| T |
2732934 |
gaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagcagctata |
2733004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 321278 - 321322
Alignment:
| Q |
30 |
gtttatatggtgggttttaggccttctgccatcgacaacactgat |
74 |
Q |
| |
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||||||||||||| |||| | ||||||||||| |||||||||||| |
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| T |
321278 |
gtttatatggtggatttttgaccttctgccattgacaacactgat |
321322 |
T |
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