View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_42 (Length: 397)
Name: NF1254_low_42
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 109 - 368
Target Start/End: Original strand, 30336989 - 30337246
Alignment:
| Q |
109 |
actatcattgtaaagatcttggaacatatgattgtcatataacaagacactaaataacatacattcctaaaatt-agaaagnnnnnnnnnnctaaatagc |
207 |
Q |
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| T |
30336989 |
actaacattgtaaagatcttggaacatatgattgtcatataataagacactaaataacatacattcctaaaatttaaaaaaaaaaaaaaaaccaaatagc |
30337088 |
T |
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| Q |
208 |
atacattcatccatgatgataaaaagaaataaccaacaatcctctaaatttcaatatatctctttcttgttcattctttgtcatgaccttttcctgacaa |
307 |
Q |
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| T |
30337089 |
atacattcatctatgatgataaaaagaaataaccaacaatcctctaaatttcaatatatctctttcttgttcattctttgtcatgaccttttcttgaca- |
30337187 |
T |
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| Q |
308 |
ctactatatggtagcaannnnnnnatggaagtgacagaacccttaaacattatttcgttag |
368 |
Q |
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| T |
30337188 |
--actatatggtagcaatttttttatggaagtgacagaacccttaaacattaattagttag |
30337246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 30336929 - 30337003
Alignment:
| Q |
15 |
aatatggtctgatatcacatgtaagtattagttttcaaattgacgtttacattttagaagactatcattgtaaag |
89 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
30336929 |
aatatggtctgatatcacatgtaagtattagttttcaaattgacgtttacattttagaaaactaacattgtaaag |
30337003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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