View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_43 (Length: 397)
Name: NF1254_low_43
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 37615826 - 37616197
Alignment:
| Q |
13 |
aatatcattaataaaatgtccctaacatgagtaaatgctagaaaactagtagttgtgtgtggtatggcaatttcattgacagactcattttcaaatattg |
112 |
Q |
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| T |
37615826 |
aatatcattaataaaatgtccctaacatgagtaaatgctagaaaactagtagttgtgtgtggtatggcaatttcattgacagactcattttcaaatattg |
37615925 |
T |
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| Q |
113 |
tgcatcacgttgacaagatagacaaagatgctttcaaactactcttttgatcaatgtataagataaacttgattggagagtcaagaggagataaataaaa |
212 |
Q |
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| T |
37615926 |
tgcatcacgttgacaagatagacaaagatactttcgaactactcttttgatcaatctataagataaacttgattggagagtcaagaggagataaataaaa |
37616025 |
T |
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| Q |
213 |
agttacagatatcgtaacaagcctaggaaatacatgatttccagtttccaccatggtatagaagtaagacaaattattatgcaagccaggtctaccgatc |
312 |
Q |
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||||| |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37616026 |
agttagagatatggtaacaagcctaggaaatacatga-------tttccaccatgttatagaagtaagacaaattattatgcaagccaggtctaccgatc |
37616118 |
T |
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| Q |
313 |
cacaaaaaacaaaattaaaacaataatgtaaatggagaacatgtgattcaacaaatcttaacttttgagtctatcatag |
391 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37616119 |
cacaaaaaacaaaattaaaaaaataatgtaaatggagaacatgtgattcaacaaatcttaacttttgagtctatcatag |
37616197 |
T |
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