View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1254_low_45 (Length: 386)

Name: NF1254_low_45
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1254_low_45
NF1254_low_45
[»] chr1 (8 HSPs)
chr1 (1-318)||(31527095-31527412)
chr1 (157-376)||(32592496-32592715)
chr1 (178-376)||(37030630-37030828)
chr1 (246-372)||(51824717-51824843)
chr1 (1-103)||(32593209-32593306)
chr1 (1-103)||(51823985-51824082)
chr1 (158-241)||(51824265-51824353)
chr1 (1-69)||(37030434-37030502)
[»] chr3 (10 HSPs)
chr3 (157-376)||(49208111-49208330)
chr3 (157-376)||(49212951-49213170)
chr3 (178-376)||(49188119-49188317)
chr3 (178-376)||(49191855-49192053)
chr3 (178-376)||(49202961-49203159)
chr3 (1-102)||(49207223-49207319)
chr3 (1-103)||(49211797-49211894)
chr3 (1-69)||(49190979-49191047)
chr3 (1-69)||(49187288-49187356)
chr3 (1-69)||(49202268-49202336)
[»] chr8 (2 HSPs)
chr8 (171-376)||(26756489-26756696)
chr8 (1-64)||(26756266-26756329)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 31527095 - 31527412
Alignment:
Q  1 cttctcatacagaattgcttctgcttctttttgtttcttgtataattcccagttagcctcttgtacctaaagtaaaccatccagaatttcaaccagtact 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31527095 cttctcatacagaattgcttctgcttctttttgtttcctgtataattcccagttagcctcttgtacctaaagtaaaccatacagaatttcaaccagtact 31527194  T
Q  101 taatcttgtttctagtaaaacaaattgnnnnnnnnnnnnnnnnnnnnnnngaaattgaaggagttatatttgcatggactaaccttggtttcatactcaa 200  Q
    |||||||||| ||||||||||||||||                       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31527195 taatcttgttgctagtaaaacaaattgaataataataataattaataaatgaaattgaaggagttatatttgcatggactaaccttggtttcatactcaa 31527294  T
Q  201 cactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31527295 cactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccac 31527394  T
Q  301 agctttagcagcctcgac 318  Q
    ||||||||||||||||||    
T  31527395 agctttagcagcctcgac 31527412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 157 - 376
Target Start/End: Complemental strand, 32592715 - 32592496
Alignment:
Q  157 gaaggagttatatttgcatggactaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattc 256  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32592715 gaaggggttatatttgcatggactaaccttggtttcatactgaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattc 32592616  T
Q  257 atcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttct 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  32592615 atcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcttcgacttcagccacttgagccgccttagtccaagccgctttct 32592516  T
Q  357 tcttcgccaactcagaatta 376  Q
    ||||||||||||||||||||    
T  32592515 tcttcgccaactcagaatta 32592496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 178 - 376
Target Start/End: Original strand, 37030630 - 37030828
Alignment:
Q  178 actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc 277  Q
    |||||||||||||||||| | |||||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||     
T  37030630 actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt 37030729  T
Q  278 aactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttcttcttcgccaactcagaatta 376  Q
    |||||||||||||||||   |||||| ||    ||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  37030730 aactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta 37030828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 246 - 372
Target Start/End: Original strand, 51824717 - 51824843
Alignment:
Q  246 tcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtcca 345  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| |||| |||||||||||| |||||||||||    
T  51824717 tcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagaaccacagatttagcagcctcaacttgagccacttgagcagccttagtcca 51824816  T
Q  346 agctgctttcttcttcgccaactcaga 372  Q
    ||| ||||||||| |||||||||||||    
T  51824817 agccgctttcttcatcgccaactcaga 51824843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 32593306 - 32593209
Alignment:
Q  1 cttctcatacagaattgcttctgcttctttttgtttcttgtataattcccagttagcctcttgtacctaaagtaaaccatccagaatttcaaccagtact 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     ||||||||||| ||||||||||||||||    
T  32593306 cttctcatacagaattgcttctgattctttttgtttcttgtataattcccagttagcctcttgtacc-----taaaccatccaaaatttcaaccagtact 32593212  T

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Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 51823985 - 51824082
Alignment:
Q  1 cttctcatacagaattgcttctgcttctttttgtttcttgtataattcccagttagcctcttgtacctaaagtaaaccatccagaatttcaaccagtact 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||| |||||||||||||||||||    
T  51823985 cttctcgtacagaattgcttctgcttctttttgtttcttgtataattcccagttagcctcttgtac-----ataaaccattcagaatttcaaccagtact 51824079  T

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Target: chr1; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 51824265 - 51824353
Alignment:
Q  158 aaggagttatatttgcatggacta-----accttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagta 241  Q
    ||||||||||||||||||||||||     |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  51824265 aaggagttatatttgcatggactaaactaaccttggtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagta 51824353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 37030434 - 37030502
Alignment:
Q  1 cttctcatacagaattgcttctgcttctttttgtttcttgtataattcccagttagcctcttgtaccta 69  Q
    |||||||||||||||||||||||| ||||| ||||| ||||| |  |||||||| || ||||| |||||    
T  37030434 cttctcatacagaattgcttctgcctctttctgttttttgtacagctcccagtttgcttcttgcaccta 37030502  T

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Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 157 - 376
Target Start/End: Original strand, 49208111 - 49208330
Alignment:
Q  157 gaaggagttatatttgcatggactaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattc 256  Q
    |||| ||||| ||||||| ||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49208111 gaagaagttaaatttgcaaggactaaccttagtgtcatattcaacactagctttgctaaggaaatcagctttaagcttctcagtagtagtcaaagcattc 49208210  T
Q  257 atcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttct 356  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |  |||||||||||||||||| | |||||||| |||||||    
T  49208211 atcctctcaacctcaccttgcaactcagcttcccttagagccacggctttagcagcctcaagctcagccacttgagccgccattgtccaagcagctttct 49208310  T
Q  357 tcttcgccaactcagaatta 376  Q
    |||| |||||||| ||||||    
T  49208311 tcttagccaactcggaatta 49208330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 157 - 376
Target Start/End: Original strand, 49212951 - 49213170
Alignment:
Q  157 gaaggagttatatttgcatggactaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattc 256  Q
    |||| ||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49212951 gaagaagttatagttgcatggactaaccttagtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagttgtagtcaaagcattc 49213050  T
Q  257 atcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttct 356  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||| ||    ||||| ||||||||||| ||||||||||| |||||||| || ||||    
T  49213051 atcttctcaacctcaccttgcaactcagcttcccttagagccacagccttcttcgcctcaacttcagccacctgagccgccttggtccaagcagccttct 49213150  T
Q  357 tcttcgccaactcagaatta 376  Q
    | || |||||||| ||||||    
T  49213151 ttttggccaactccgaatta 49213170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 178 - 376
Target Start/End: Original strand, 49188119 - 49188317
Alignment:
Q  178 actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc 277  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||    
T  49188119 actaaccttggtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc 49188218  T
Q  278 aactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttcttcttcgccaactcagaatta 376  Q
    |||||||||||||||||||| ||||| ||    ||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  49188219 aactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta 49188317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 178 - 376
Target Start/End: Original strand, 49191855 - 49192053
Alignment:
Q  178 actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc 277  Q
    |||||||||||||||||| | |||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||     
T  49191855 actaaccttggtttcatattgaacactagctttgctaaggaactcagctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgt 49191954  T
Q  278 aactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttcttcttcgccaactcagaatta 376  Q
    |||||||| ||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||    
T  49191955 aactcagcatcccttagagcgacggctttggcagcctcaacttcggccacttgagccgccttagtccaagccgctttcttcttagccaattcagaatta 49192053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 178 - 376
Target Start/End: Original strand, 49202961 - 49203159
Alignment:
Q  178 actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc 277  Q
    ||||||||| |||||||| | |||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||     
T  49202961 actaaccttagtttcatattgaacactagctttgctaaggaactcggctttaagcttctcagtagtagtcaaagcattcatcctttcaacttcaccttgt 49203060  T
Q  278 aactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttcttcttcgccaactcagaatta 376  Q
    |||||||| |||||||||||||| || ||    ||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  49203061 aactcagcatcccttagagccacggccttcttcgcctcaacttcagccacctgagccgccttagtccaagctgccttcttcttagccaactcagaatta 49203159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 49207223 - 49207319
Alignment:
Q  1 cttctcatacagaattgcttctgcttctttttgtttcttgtataattcccagttagcctcttgtacctaaagtaaaccatccagaatttcaaccagtact 100  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||     ||||||||||||||| ||| |||    
T  49207223 cttctcatacagaattgcttcagcctctttttgtttcttgtataattcccagttagcctcttgtacctagag-----catccagaatttcaatcagcact 49207317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 49211797 - 49211894
Alignment:
Q  1 cttctcatacagaattgcttctgcttctttttgtttcttgtataattcccagttagcctcttgtacctaaagtaaaccatccagaatttcaaccagtact 100  Q
    ||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||     ||||||||||||||||| | |||    
T  49211797 cttctcaaacagaattgcttctgcctccttttgtttcttgtataattcccagttagcctcttgtacctacag-----catccagaatttcaaccggcact 49211891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 49190979 - 49191047
Alignment:
Q  1 cttctcatacagaattgcttctgcttctttttgtttcttgtataattcccagttagcctcttgtaccta 69  Q
    |||||||||||||||||||||||| || |||||||||||||| |  |||||||| || |||||||||||    
T  49190979 cttctcatacagaattgcttctgcctccttttgtttcttgtacagctcccagtttgcttcttgtaccta 49191047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 49187288 - 49187356
Alignment:
Q  1 cttctcatacagaattgcttctgcttctttttgtttcttgtataattcccagttagcctcttgtaccta 69  Q
    ||||||||||||||||||||| |  ||||| ||||||||||| |  |||||||| || |||||||||||    
T  49187288 cttctcatacagaattgcttcagtctctttctgtttcttgtacagctcccagtttgcttcttgtaccta 49187356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 49202268 - 49202336
Alignment:
Q  1 cttctcatacagaattgcttctgcttctttttgtttcttgtataattcccagttagcctcttgtaccta 69  Q
    ||||||||||||||||||||| || ||||| || |||||||| |  |||||||| || |||||||||||    
T  49202268 cttctcatacagaattgcttcagcctctttctgcttcttgtacagctcccagtttgcttcttgtaccta 49202336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 171 - 376
Target Start/End: Original strand, 26756489 - 26756696
Alignment:
Q  171 tgcatggactaaccttggtttcatactcaacactagctttgctaagta---aatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaac 267  Q
    ||||||||||||||||||||||||| |  ||||||||||| |||| ||   | |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  26756489 tgcatggactaaccttggtttcata-tgtacactagctttactaattaggaactcaggtttaagcttctcagtggtagtcaaagcattcatcctctcaac 26756587  T
Q  268 ctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttcttcttcgccaac 367  Q
    |||||| ||||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| | ||||    
T  26756588 ctcaccttgcaactcagcttccctaagggccacagctttagcagcctcaacttcagcgacttgagccgccttagtccaagccgctttcttcttagtcaac 26756687  T
Q  368 tcagaatta 376  Q
    || ||||||    
T  26756688 tcggaatta 26756696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 26756266 - 26756329
Alignment:
Q  1 cttctcatacagaattgcttctgcttctttttgtttcttgtataattcccagttagcctcttgt 64  Q
    |||||||||||||||||||||||| ||||||||||||||||| |  |||||||| |||||||||    
T  26756266 cttctcatacagaattgcttctgcctctttttgtttcttgtacagctcccagtttgcctcttgt 26756329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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