View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_46 (Length: 385)
Name: NF1254_low_46
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 232
Target Start/End: Original strand, 225189 - 225392
Alignment:
| Q |
29 |
atcataggatcaattcagtttgatatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctc |
128 |
Q |
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| T |
225189 |
atcataggatcaattcagtttgatatgtcaaaataaagctgagaagtggcattgtatatggccgcctttactagattatgggaaaccatattaacctctc |
225288 |
T |
|
| Q |
129 |
tcataaaaaacgcgacataagagttgttacgagataaaccaaaaggacataaagatataagtgtaacaataaaagtaaagaaggtggggcatgccatacc |
228 |
Q |
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| T |
225289 |
tcataaaaaacgcgacataagagttgttacgagataaaccaaaaggacataaagatataagtgtaacaataaaagtaaagaaggtggggcatgccatacc |
225388 |
T |
|
| Q |
229 |
aatc |
232 |
Q |
| |
|
|||| |
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|
| T |
225389 |
aatc |
225392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 8746493 - 8746599
Alignment:
| Q |
52 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
151 |
Q |
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||||| ||||||||| ||||| | ||||| |||| ||||| |||||| || | ||| | |||||||||| |||||||| || ||||| ||||||||||| |
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| T |
8746493 |
tatgttaaaataaagaagagaactagcattatatacggccgtctttgcaagttcatgagcaaccatattagcctctctcctagaaaactcgacataagag |
8746592 |
T |
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| Q |
152 |
ttgttac |
158 |
Q |
| |
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||||||| |
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| T |
8746593 |
ttgttac |
8746599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 6955029 - 6955135
Alignment:
| Q |
52 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
151 |
Q |
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|
||||||||||||||| |||||| ||||||| |||| ||| ||||||| || | ||| | |||||||||| ||||||| || ||||| ||||||||||| |
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| T |
6955029 |
tatgtcaaaataaagatgagaattggcattatatacagccacctttgcaagttcatgagcaaccatattagtctctctcttagaaaactcgacataagag |
6955128 |
T |
|
| Q |
152 |
ttgttac |
158 |
Q |
| |
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||||||| |
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|
| T |
6955129 |
ttgttac |
6955135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 28695254 - 28695148
Alignment:
| Q |
52 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
151 |
Q |
| |
|
|||||||| |||||| |||||| || |||| ||||||| ||||||||| || | ||| | |||||||||| || |||| || ||||| ||| ||||||| |
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| T |
28695254 |
tatgtcaatataaagatgagaactgacattatatatggtcgcctttgcaagttcatgagcaaccatattagactgtctcctagaaaactcgaaataagag |
28695155 |
T |
|
| Q |
152 |
ttgttac |
158 |
Q |
| |
|
||||||| |
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|
| T |
28695154 |
ttgttac |
28695148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 41289773 - 41289882
Alignment:
| Q |
51 |
atatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataaga |
150 |
Q |
| |
|
|||| |||||||| || |||||| || |||| ||||||| ||| ||||| |||||||| | || ||||||| | ||||| || |||| |||||||||| |
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| T |
41289773 |
atatatcaaaatagagatgagaattgtcattatatatggtcgcttttgcaagattatgagcaatcatattagcatctcttttagaaaaatcgacataaga |
41289872 |
T |
|
| Q |
151 |
gttgttacga |
160 |
Q |
| |
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|||||||||| |
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|
| T |
41289873 |
gttgttacga |
41289882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 32011625 - 32011520
Alignment:
| Q |
52 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
151 |
Q |
| |
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|||||||||||| | |||||| | |||| | |||||||| ||||| |||||||| |||||||||| |||||||||| ||||| ||||||||||| |
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| T |
32011625 |
tatgtcaaaatatatatgagaatagacattatctatggccgtctttggaagattatgaacaaccatattattctctctcatagaaaactcgacataagag |
32011526 |
T |
|
| Q |
152 |
ttgtta |
157 |
Q |
| |
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|||||| |
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|
| T |
32011525 |
ttgtta |
32011520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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