View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_48 (Length: 377)
Name: NF1254_low_48
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 48357262 - 48357594
Alignment:
| Q |
30 |
catttcacctgaattctttcgcacaaatgcaaacggtgttgaattctttgctcaagaggttgaaactctctcaaagcaacgccacaggtttgtgcttaat |
129 |
Q |
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| T |
48357262 |
catttcacctgaattctttcgcacaaatgcaaacggtgttgaattctttgctcaagaggttgaaactctctcaaagcaacgccacaggtttgtgcttaat |
48357361 |
T |
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| Q |
130 |
ctaatgggtgcatgtcttgaccctcctaatcatgcttgggttgttactgaatatctaagcaccacacttaaggagtggctttatggtcctggcaaaagac |
229 |
Q |
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| T |
48357362 |
ctaatgggtgcatgtcttgaccctcctaatcatgcttgggtggttactgaatatctaagcaccacacttaaggagtggctttatggtcctggcaaaagac |
48357461 |
T |
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| Q |
230 |
gcagagatagaattgtgccacttcctcctttcaaagaaagactaacaagggtcatagagatagcccaagctatgcagtatcttcatgagcaaaagcccaa |
329 |
Q |
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| T |
48357462 |
gcagagatagaattgtgccacttcctcctttcaaagaaagactaacaagggtcatagagatagcccaagctatgcagtatcttcatgagcaaaagcccaa |
48357561 |
T |
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| Q |
330 |
aattattcaccgtgacttgaagcccagcaacat |
362 |
Q |
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| T |
48357562 |
aattattcaccgtgacttgaagcccagcaacat |
48357594 |
T |
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