View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1254_low_49 (Length: 361)

Name: NF1254_low_49
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1254_low_49
NF1254_low_49
[»] chr7 (6 HSPs)
chr7 (37-210)||(36647468-36647641)
chr7 (56-198)||(7737307-7737449)
chr7 (56-197)||(48821855-48821996)
chr7 (56-141)||(35130599-35130683)
chr7 (55-142)||(40772870-40772957)
chr7 (27-76)||(34510814-34510863)
[»] chr2 (3 HSPs)
chr2 (45-195)||(36316273-36316422)
chr2 (56-187)||(6016847-6016975)
chr2 (65-142)||(12015127-12015204)
[»] chr5 (10 HSPs)
chr5 (27-187)||(35309118-35309277)
chr5 (58-195)||(31185993-31186127)
chr5 (56-186)||(35304676-35304805)
chr5 (56-181)||(43233838-43233963)
chr5 (55-151)||(39040538-39040632)
chr5 (56-123)||(27405306-27405373)
chr5 (56-141)||(25213823-25213907)
chr5 (56-141)||(25277973-25278057)
chr5 (27-148)||(30518656-30518777)
chr5 (27-148)||(30558996-30559117)
[»] chr8 (6 HSPs)
chr8 (56-187)||(11080182-11080312)
chr8 (27-152)||(4676204-4676327)
chr8 (67-171)||(37869-37971)
chr8 (56-152)||(4678149-4678243)
chr8 (46-142)||(26174318-26174414)
chr8 (83-142)||(26175463-26175522)
[»] scaffold0263 (1 HSPs)
scaffold0263 (56-187)||(22918-23048)
[»] chr4 (6 HSPs)
chr4 (56-198)||(27510483-27510625)
chr4 (130-198)||(5444718-5444786)
chr4 (130-198)||(35783719-35783787)
chr4 (56-142)||(13436434-13436519)
chr4 (130-198)||(5440823-5440891)
chr4 (56-169)||(11001295-11001406)
[»] chr3 (5 HSPs)
chr3 (56-187)||(39091329-39091459)
chr3 (56-149)||(35610873-35610966)
chr3 (54-141)||(27825691-27825777)
chr3 (55-123)||(33785860-33785928)
chr3 (65-134)||(19439530-19439599)
[»] chr1 (4 HSPs)
chr1 (56-186)||(41418095-41418223)
chr1 (27-141)||(9908152-9908264)
chr1 (56-141)||(9905790-9905873)
chr1 (27-119)||(18705679-18705771)
[»] chr6 (5 HSPs)
chr6 (83-200)||(9231512-9231628)
chr6 (56-144)||(6860162-6860250)
chr6 (54-142)||(14618732-14618821)
chr6 (83-142)||(10774543-10774602)
chr6 (45-97)||(23343905-23343955)
[»] scaffold0017 (1 HSPs)
scaffold0017 (84-187)||(182977-183080)


Alignment Details
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 36647468 - 36647641
Alignment:
Q  37 cagattaactctgatatcatgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattaga 136  Q
    ||||||| |||||||| ||| |||| | ||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||| ||| ||| |||    
T  36647468 cagattagctctgataccatattagaaaacatgatatccaatgaaagaatgagagaaaacttagagaatatttctattgatgataaaaatgaatataaga 36647567  T
Q  137 aatgataagagatatcttctaatgaggtggttacacctatatataatactaaataactaatattgtactgacta 210  Q
    |||||||||||||| ||||||||||||||||| || ||||||||| |||||||| |||||||||||||| ||||    
T  36647568 aatgataagagataccttctaatgaggtggtttcaactatatatagtactaaatgactaatattgtactaacta 36647641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 56 - 198
Target Start/End: Complemental strand, 7737449 - 7737307
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttc 155  Q
    |||||||| |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  7737449 tgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaatgataagagatatcttc 7737350  T
Q  156 taatgaggtggttacacctatatataatactaaataactaata 198  Q
    |||||||||| |||||  |||||||| ||||| || |||||||    
T  7737349 taatgaggtgattacaattatatatactactacatgactaata 7737307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 48821855 - 48821996
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttc 155  Q
    ||||| || ||||||||||||  |||| ||||||||||||||| |||||| ||||||||||||||||| |||| ||||| ||||| ||| ||||  ||||    
T  48821855 tgttatgaaacatgatatccatggaagaaatgagagaaaactcagagaatttttctattgatgataaatgtgaatattacaaatggtaaaagatgccttc 48821954  T
Q  156 taatgaggtggttacacctatatataatactaaataactaat 197  Q
    |||| ||||||||||| ||||||||| ||||| || ||||||    
T  48821955 taataaggtggttacaactatatatactactatatgactaat 48821996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 35130683 - 35130599
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatga 141  Q
    |||||||| ||||||||||||||||||||||||||||||||||  | ||| ||| |||||||||| ||||||| ||||| ||||||    
T  35130683 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatgat-aaagtgaatattacaaatga 35130599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 40772870 - 40772957
Alignment:
Q  55 atgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgat 142  Q
    ||||||| | |||| |||| ||| ||||||||||||||||||||  | ||| ||| |||||||||||||||||| ||||| |||||||    
T  40772870 atgttagtaaacatcatatacaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaatgat 40772957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 34510863 - 34510814
Alignment:
Q  27 aggtggatagcagattaactctgatatcatgttaggagacatgatatcca 76  Q
    ||||||||| ||||||| |||||||| |||||||||| ||||||||||||    
T  34510863 aggtggataccagattagctctgataccatgttaggaaacatgatatcca 34510814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 45 - 195
Target Start/End: Original strand, 36316273 - 36316422
Alignment:
Q  45 ctctgatatcatgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataa 144  Q
    |||||||| ||| |||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||  |||||||     
T  36316273 ctctgataccatattaggaaacatgatatccaatgaaggaatgagagaaaactcagacaatatttctattgatgataaaagtgaatatta-caatgatat 36316371  T
Q  145 gagatatcttctaatgaggtggttacacctatatataatactaaataacta 195  Q
    |||||| |||||||||||||||||||| ||||||||| ||||| |||||||    
T  36316372 gagataccttctaatgaggtggttacaactatatatactactatataacta 36316422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 6016847 - 6016975
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttc 155  Q
    |||||||| ||||||||||||||||||||||| || |||||||  |||||||||||||||||||||||||||| | ||| || |||||||||||| ||||    
T  6016847 tgttaggaaacatgatatccaatgaaggaatgggaaaaaactc--agaatatttctattgatgataaaagtgaatgttacaa-tgataagagataccttc 6016943  T
Q  156 taatgaggtggttacacctatatataatacta 187  Q
    |||||||||||||||| ||||||||| |||||    
T  6016944 taatgaggtggttacatctatatatactacta 6016975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 12015204 - 12015127
Alignment:
Q  65 acatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgat 142  Q
    ||||||||||||| ||| ||||||||||||||||  | ||||||| |||||||||||||||||| ||||| |||||||    
T  12015204 acatgatatccaaggaaagaatgagagaaaactcaaataatatttgtattgatgataaaagtgaatattacaaatgat 12015127  T

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Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 27 - 187
Target Start/End: Original strand, 35309118 - 35309277
Alignment:
Q  27 aggtggatagcagattaactctgatatcatgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagt 126  Q
    ||||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |||  ||  ||||||||||||||||||||||||||    
T  35309118 aggtggataccagattagctctgataccatgttaggaaacatgatatccaatgaaggaatgagaaaaatttcatagaatatttctattgatgataaaagt 35309217  T
Q  127 gattattagaaatgataagagatatcttctaatgaggtggttacacctatatataatacta 187  Q
     | |||||  |||||||||||||| ||| |||||||||||||||| ||||||||| |||||    
T  35309218 aaatatta-caatgataagagatagcttataatgaggtggttacatctatatatactacta 35309277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 58 - 195
Target Start/End: Original strand, 31185993 - 31186127
Alignment:
Q  58 ttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttcta 157  Q
    |||||| ||||||||||||| ||||||||||||||||||||  | |||||||||||||||||||||||||| ||||| || ||||| |||||| ||||||    
T  31185993 ttaggaaacatgatatccaacgaaggaatgagagaaaactc--ataatatttctattgatgataaaagtgaatattacaa-tgatatgagataccttcta 31186089  T
Q  158 atgaggtggttacacctatatataatactaaataacta 195  Q
    |||||||||||||| ||||||||| ||||| |||||||    
T  31186090 atgaggtggttacaactatatatactactacataacta 31186127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 35304676 - 35304805
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttc 155  Q
    |||||||| ||||||||| |||||||| |||||||  || ||| ||||||||||||||||||||||||||||| |||||  |||||||||| ||| ||||    
T  35304676 tgttaggaaacatgatattcaatgaagaaatgagaagaatctcagagaatatttctattgatgataaaagtgaatatta-taatgataagaaataccttc 35304774  T
Q  156 taatgaggtggttacacctatatataatact 186  Q
    |||||||||||||| | ||||||||| ||||    
T  35304775 taatgaggtggttatatctatatatactact 35304805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 43233963 - 43233838
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttc 155  Q
    |||||||| |||||  |||||  ||||||||||||||||||||  ||||| |||||||||||||||||  ||| ||||| |||||||||||||||  |||    
T  43233963 tgttaggaaacatggcatccatggaaggaatgagagaaaactcaaagaatctttctattgatgataaagttgaatattacaaatgataagagatactttc 43233864  T
Q  156 taatgaggtggttacacctatatata 181  Q
    ||| |||||| ||||| |||||||||    
T  43233863 taaagaggtgattacaactatatata 43233838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 39040538 - 39040632
Alignment:
Q  55 atgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatat 151  Q
    ||||||||| ||||||||||||   ||||||||||||||||||  |||||| |||||||||||||||||||||| |||||  |||||||||||||||    
T  39040538 atgttaggaaacatgatatccaca-aaggaatgagagaaaactaagagaatgtttctattgatgataaaagtgaatatta-caatgataagagatat 39040632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 27405306 - 27405373
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaa 123  Q
    |||||||| ||||||||||||||||||||||||||||||||||  | ||| ||| |||||||| ||||    
T  27405306 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatggtaaa 27405373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 25213907 - 25213823
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatga 141  Q
    |||||||| |||||||||||||||| ||||||||||||||||   | ||| ||| |||||||||| ||||||| ||||| ||||||    
T  25213907 tgttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaaatga 25213823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 25278057 - 25277973
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatga 141  Q
    |||||||| |||||||||||||||| ||||||||||||||||   | ||| ||| |||||||||| ||||||| ||||| ||||||    
T  25278057 tgttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaaatga 25277973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 30518656 - 30518777
Alignment:
Q  27 aggtggatagcagattaactctgatatcatgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagt 126  Q
    ||||||||| ||||||| |||| ||| |||||||  | ||||||||| ||  |||||||  |||||||||||  | ||| |||||||| |||||||| ||    
T  30518656 aggtggataccagattagctcttataccatgttataaaacatgatatacatagaaggaacaagagaaaactcaaaaaatctttctatttatgataaatgt 30518755  T
Q  127 gattattagaaatgataagaga 148  Q
     | | ||| |||||||||||||    
T  30518756 aaatgttacaaatgataagaga 30518777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 30558996 - 30559117
Alignment:
Q  27 aggtggatagcagattaactctgatatcatgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagt 126  Q
    ||||||||| ||||||| |||| ||| |||||||  | ||||||||| ||  |||||||  |||||||||||  | ||| |||||||| |||||||| ||    
T  30558996 aggtggataccagattagctcttataccatgttataaaacatgatatacatagaaggaacaagagaaaactcaaaaaatctttctatttatgataaatgt 30559095  T
Q  127 gattattagaaatgataagaga 148  Q
     | | ||| |||||||||||||    
T  30559096 aaatgttacaaatgataagaga 30559117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 11080312 - 11080182
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttc 155  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||    
T  11080312 tgttaggaaacatgatatccaatgaaagaatgagaaaaaactcggagaatatttctattaatgataaaagtgaatatta-aaatgataagagataccttc 11080214  T
Q  156 taatgaggtggttacacctatatataatacta 187  Q
    ||||||||| |||||  ||||||||| |||||    
T  11080213 taatgaggtagttacttctatatatactacta 11080182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 4676327 - 4676204
Alignment:
Q  27 aggtggatagcagattaactctgatatcatgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagt 126  Q
    ||||||||| ||| ||| |||||||| ||| |||||| ||||||||||||  |||||||||||||||||||  |||||||||||||||||||||||||||    
T  4676327 aggtggataccaggttagctctgataccatattaggaaacatgatatccac-gaaggaatgagagaaaactaagagaatatttctattgatgataaaagt 4676229  T
Q  127 gattattagaaatgataagagatatc 152  Q
    || |||||  ||||||||||||||||    
T  4676228 gaatatta-caatgataagagatatc 4676204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 37971 - 37869
Alignment:
Q  67 atgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttctaatgaggtgg 166  Q
    ||||||||||||||||||||||||||||| |  ||||   |||||||| ||||||||||||| | ||| ||||||||||||||||||| |||||||||||    
T  37971 atgatatccaatgaaggaatgagagaaaattaagaga--ctttctatttatgataaaagtgaatgttacaaatgataagagatatcttttaatgaggtgg 37874  T
Q  167 ttaca 171  Q
    |||||    
T  37873 ttaca 37869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 4678243 - 4678149
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatc 152  Q
    |||||||| ||||||||||||  |||||||||||||||||||  ||||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  4678243 tgttaggaaacatgatatccac-gaaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatatta-caatgataagagatatc 4678149  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 26174414 - 26174318
Alignment:
Q  46 tctgatatcatgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgat 142  Q
    ||||||| |||||||| | ||||||||||||| ||||||||||||||||||||  | ||| ||| |||||||||||||||||| ||||| |||||||    
T  26174414 tctgataccatgttagtaaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaatgat 26174318  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 26175522 - 26175463
Alignment:
Q  83 gaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgat 142  Q
    ||||||||||||||||  | ||| ||| |||||||||||||||||| ||||| |||||||    
T  26175522 gaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaatgat 26175463  T

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Target: scaffold0263 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 23048 - 22918
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttc 155  Q
    |||||||| ||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||| |||||  ||||||||||| || ||||    
T  23048 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgataaaagtgaatatta-caatgataagagctaccttc 22950  T
Q  156 taatgaggtggttacacctatatataatacta 187  Q
    ||||||||||||||||  |||||||| |||||    
T  22949 taatgaggtggttacaagtatatatactacta 22918  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 27510483 - 27510625
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttc 155  Q
    |||||||| |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||| ||||| ||||||| | || |  ||||    
T  27510483 tgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaatgatcaaaggttccttc 27510582  T
Q  156 taatgaggtggttacacctatatataatactaaataactaata 198  Q
    |||||||||| ||||| ||||||| | ||||| || |||||||    
T  27510583 taatgaggtgattacaactatatacactactacatgactaata 27510625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 5444786 - 5444718
Alignment:
Q  130 tattagaaatgataagagatatcttctaatgaggtggttacacctatatataatactaaataactaata 198  Q
    ||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |||||  |||||||||    
T  5444786 tattacaaatgataagagataccttctaatgaggtggttacaactatatatactactacttaactaata 5444718  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 35783787 - 35783719
Alignment:
Q  130 tattagaaatgataagagatatcttctaatgaggtggttacacctatatataatactaaataactaata 198  Q
    ||||| ||||||||||||| | |||||||||||||||||||| ||||||||| |||||  |||||||||    
T  35783787 tattacaaatgataagagacaccttctaatgaggtggttacaactatatatactactacttaactaata 35783719  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 13436434 - 13436519
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgat 142  Q
    |||||||| |||||||||  ||  |||||||||||||||||||  ||| ||||| |||||||||||||||||| ||||| |||||||    
T  13436434 tgttaggaaacatgatatttaagaaaggaatgagagaaaactca-agattatttttattgatgataaaagtgaatattacaaatgat 13436519  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 5440891 - 5440823
Alignment:
Q  130 tattagaaatgataagagatatcttctaatgaggtggttacacctatatataatactaaataactaata 198  Q
    |||||||||| |||||| ||| ||||||| |||||||||||| ||||||||| |||||  |||||||||    
T  5440891 tattagaaatcataagaaataccttctaacgaggtggttacaactatatatactactacttaactaata 5440823  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 11001295 - 11001406
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttc 155  Q
    |||||||| ||||||||||||  |||| | ||| |||||||||  ||||| ||| |||||||||||||||||| | ||| | ||||||| | ||| ||||    
T  11001295 tgttaggaaacatgatatccatggaagaactgaaagaaaactca-agaattttt-tattgatgataaaagtgaatgttacagatgataaaaaataccttc 11001392  T
Q  156 taatgaggtggtta 169  Q
    || |||| ||||||    
T  11001393 tagtgagatggtta 11001406  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 39091329 - 39091459
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttc 155  Q
    ||||| || ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||| |||||| |||||  |||||||| ||||| ||||    
T  39091329 tgttatgaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgatagaagtgaatatta-caatgataaaagataccttc 39091427  T
Q  156 taatgaggtggttacacctatatataatacta 187  Q
    | ||||||||||||||  |||||||| |||||    
T  39091428 tgatgaggtggttacaaatatatatactacta 39091459  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 35610966 - 35610873
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagat 149  Q
    |||||||| ||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| |||  |||| ||||||||||||||    
T  35610966 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagaatacttctattgatgataaaattgaaaattacaaatgataagagat 35610873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 27825691 - 27825777
Alignment:
Q  54 catgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatga 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||  | ||| ||| |||||||||| ||||||| ||||| ||||||    
T  27825691 catgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaaatga 27825777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 33785928 - 33785860
Alignment:
Q  55 atgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaa 123  Q
    ||||||||| ||||||||||||||||||||||||||||||||||  | ||| ||| |||||||||||||    
T  33785928 atgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaacaatctttgtattgatgataaa 33785860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 19439599 - 19439530
Alignment:
Q  65 acatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattatta 134  Q
    ||||||||||||| ||||||||||||||||||||  | ||| ||| |||||||||||||||||| |||||    
T  19439599 acatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatatta 19439530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 41418223 - 41418095
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttc 155  Q
    |||||||| |||||||||||||||||||||| ||||||||||   ||| | |||| ||||||||||||||||| ||||| ||||||||||||||  ||||    
T  41418223 tgttaggaaacatgatatccaatgaaggaattagagaaaacta--agattctttcaattgatgataaaagtgaatattacaaatgataagagatgccttc 41418126  T
Q  156 taatgaggtggttacacctatatataatact 186  Q
    |||||||||||||| | ||||||||| ||||    
T  41418125 taatgaggtggttagaactatatatactact 41418095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 9908152 - 9908264
Alignment:
Q  27 aggtggatagcagattaactctgatatcatgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagt 126  Q
    ||||||||| ||||||| |||||||| |||||||||| |||||||||||||  |||||||||||||||||||  | ||| ||| |||||||||| |||||    
T  9908152 aggtggataccagattagctctgataccatgttaggaaacatgatatccaa-caaggaatgagagaaaactcaaataatctttgtattgatgat-aaagt 9908249  T
Q  127 gattattagaaatga 141  Q
    || ||||| ||||||    
T  9908250 gaatattacaaatga 9908264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 9905790 - 9905873
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatga 141  Q
    |||||||| |||||||||||||  |||||||||||||||||||  | ||| ||| |||||||||| ||||||| ||||| ||||||    
T  9905790 tgttaggaaacatgatatccaac-aaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaaatga 9905873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 18705679 - 18705771
Alignment:
Q  27 aggtggatagcagattaactctgatatcatgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatga 119  Q
    ||||||||| ||||||| |||||||| |||||||| | |||||  |||||   |||||| |||||||||||  || | | |||||||||||||    
T  18705679 aggtggataccagattagctctgataccatgttagaaaacatggcatccatgaaaggaaggagagaaaactaagaaactctttctattgatga 18705771  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 9231628 - 9231512
Alignment:
Q  83 gaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttctaatgaggtggttacacctatatataa 182  Q
    ||||||||||| ||||  ||||| |||||||||||||||||||||| ||||| || |||||||||||  | ||||||||||||| |||| |||||||||     
T  9231628 gaatgagagaatactcaaagaatctttctattgatgataaaagtgaatattacaagtgataagagat-ccctctaatgaggtggctacaactatatatac 9231530  T
Q  183 tactaaataactaatatt 200  Q
    ||||| || |||||||||    
T  9231529 tactatatgactaatatt 9231512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 6860250 - 6860162
Alignment:
Q  56 tgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataa 144  Q
    |||||| | ||||||||||||| ||||||||||||||||||||  | ||| ||| |||||||||||||||||| ||||| |||||||||    
T  6860250 tgttagtaaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaatgataa 6860162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 14618732 - 14618821
Alignment:
Q  54 catgttaggagacatgatatccaatgaaggaatgagagaaaactcggagaat-atttctattgatgataaaagtgattattagaaatgat 142  Q
    |||||||| | ||||||||||||| |||||||||| |||||||||  | |||  ||| ||||||||||||||||||  |||| |||||||    
T  14618732 catgttagtaaacatgatatccaaggaaggaatgaaagaaaactcaaataatgttttgtattgatgataaaagtgaacattacaaatgat 14618821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 10774543 - 10774602
Alignment:
Q  83 gaatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgat 142  Q
    ||||||||||||||||  | ||| ||| |||||||||||||||||| ||||| |||||||    
T  10774543 gaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaaatgat 10774602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 23343955 - 23343905
Alignment:
Q  45 ctctgatatcatgttaggagacatgatatccaatgaaggaatgagagaaaact 97  Q
    |||||||| ||||||  || |||| ||||||||||||||||||||||||||||    
T  23343955 ctctgataccatgtt--gaaacattatatccaatgaaggaatgagagaaaact 23343905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 183080 - 182977
Alignment:
Q  84 aatgagagaaaactcggagaatatttctattgatgataaaagtgattattagaaatgataagagatatcttctaatgaggtggttacacctatatataat 183  Q
    |||||||||||||||    ||| ||||| |||||||||||||||| ||||| ||||||   ||  || ||||||||||||||| |||| ||||||||| |    
T  183080 aatgagagaaaactcaagtaatctttcttttgatgataaaagtgaatattacaaatgaagtgaagtaccttctaatgaggtggctacaactatatatact 182981  T
Q  184 acta 187  Q
    ||||    
T  182980 acta 182977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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