View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_55 (Length: 335)
Name: NF1254_low_55
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 199 - 322
Target Start/End: Complemental strand, 11027028 - 11026905
Alignment:
| Q |
199 |
tataaattaagctcttgtagaattaaaccacttgcagtaaaagtttctttgtttattttattaactgagtgaaaattttacttgtgaactttttaatagt |
298 |
Q |
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| T |
11027028 |
tataaattaagctcttgtagaattaaaccacttgcagtaaaagtttctctgtttattttattaactgagtgaaaattttacttgtgaactttttaatagt |
11026929 |
T |
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| Q |
299 |
aaatacaaggactttttaatagta |
322 |
Q |
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| T |
11026928 |
aaatacaaggactttttaatagta |
11026905 |
T |
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Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 11033770 - 11033602
Alignment:
| Q |
30 |
gttactggttgattaattaattacaattgataaacataccnnnnnnnnnnnnncatacaaacaaaagcagatgtgcaataaggataatattcttttctct |
129 |
Q |
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| T |
11033770 |
gttactggttcattaattaattacaattgataaacataccaaaaaaaacaaa-cacacaaacaaaagcagatgtgcaataaggataatattcttttctct |
11033672 |
T |
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| Q |
130 |
aatagagtacttgaaaataacattaccaccttccgtgtgttttacttcaataaaagtggcaatgaagagtataaatta |
207 |
Q |
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| T |
11033671 |
a--------cttgaaagtaacatcaccaccttccgtgtgttttacttcaataaaagtggcaatgaagagtataaatta |
11033602 |
T |
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