View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_6 (Length: 641)
Name: NF1254_low_6
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 16941753 - 16941157
Alignment:
| Q |
1 |
aaagggaaaaattattattgaagtgacattaatgaccattttacgatattgctcttgatcgagaaagcctttgaacttttgtcgttttaaatcatataaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
16941753 |
aaagggaaaaattattattgaagtgacattaatgaccattttacgatattgctcttgatcgagaaagcctttaaacttttgtcgttttagatcatataaa |
16941654 |
T |
|
| Q |
101 |
ctcaaacttttacaatagggctctatacatctcatgagattaaaaacaatatttcattaaaatgaaattctattttgcttacataataggctgtgacaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16941653 |
ctcaaacttttacaatagggctctatacatctcatgagattaaaaacaatatttcattaaaatgaaattctattttgcttacataataggctgtgacaat |
16941554 |
T |
|
| Q |
201 |
gccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagatttgtctaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16941553 |
gccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagatttatctaag |
16941454 |
T |
|
| Q |
301 |
gtcaggctgagactctgcccattttcaaggactttggcacgactctcaccccatgttatttcaaaatctttcataaaattaccagcagatgcatacacca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16941453 |
gtcaggctgagactctgcccattttcaaggactttggcacgactctcaccccatgttatttcaaaatctttcataaaattaccagccgatgcatacacca |
16941354 |
T |
|
| Q |
401 |
aaaaagtggcaacaagaaggaggaataaaccaatatcacccttaaatttcatttcataacaaattttccaagcaatgagttagggttggttgattggaat |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16941353 |
aaaaagtggcaacaagaaggaggaataaaccaatatcacccttaaatttcatttcataacaaattttccaagcaatgagttagggttggttgattggaat |
16941254 |
T |
|
| Q |
501 |
actattgcaaccaatgttatatatataga--gagaaatttagaggacacatgccaagtgaaatatttgatgaatgcatgtaaagttttggaggtatt |
595 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
16941253 |
actattgcaaccaatgttatatatatagagagagaaatttagaggacacatgccaagtgaaatatttgatgaatgcatccaaagttttggaggtatt |
16941157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 17012418 - 17011822
Alignment:
| Q |
1 |
aaagggaaaaattattattgaagtgacattaatgaccattttacgatattgctcttgatcgagaaagcctttgaacttttgtcgttttaaatcatataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
17012418 |
aaagggaaaaattattattgaagtgacattaatgaccattttacgatattgctcttgatcgagaaagcctttaaacttttgtcgttttagatcatataaa |
17012319 |
T |
|
| Q |
101 |
ctcaaacttttacaatagggctctatacatctcatgagattaaaaacaatatttcattaaaatgaaattctattttgcttacataataggctgtgacaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17012318 |
ctcaaacttttacaatagggctctatacatctcatgagattaaaaacaatatttcattaaaatgaaattctattttgcttacataataggctgtgacaat |
17012219 |
T |
|
| Q |
201 |
gccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagatttgtctaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17012218 |
gccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagatttatctaag |
17012119 |
T |
|
| Q |
301 |
gtcaggctgagactctgcccattttcaaggactttggcacgactctcaccccatgttatttcaaaatctttcataaaattaccagcagatgcatacacca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
17012118 |
gtcaggctgagactctgcccattttcaaggactttggcacgactctcaccccatgttatttcaaaatctttcataaaattaccagccgatgcatacacca |
17012019 |
T |
|
| Q |
401 |
aaaaagtggcaacaagaaggaggaataaaccaatatcacccttaaatttcatttcataacaaattttccaagcaatgagttagggttggttgattggaat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17012018 |
aaaaagtggcaacaagaaggaggaataaaccaatatcacccttaaatttcatttcataacaaattttccaagcaatgagttagggttggttgattggaat |
17011919 |
T |
|
| Q |
501 |
actattgcaaccaatgttatatatataga--gagaaatttagaggacacatgccaagtgaaatatttgatgaatgcatgtaaagttttggaggtatt |
595 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
17011918 |
actattgcaaccaatgttatatatatagagagagaaatttagaggacacatgccaagtgaaatatttgatgaatgcatccaaagttttggaggtatt |
17011822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 52590574 - 52590456
Alignment:
| Q |
178 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagc |
277 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||| | ||||| || ||||||||||||||||| |||||||||||||||| |||||||||||| | |
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|
| T |
52590574 |
cttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaatc |
52590475 |
T |
|
| Q |
278 |
cagagccagaagatttgtc |
296 |
Q |
| |
|
|||||||||| | |||||| |
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|
| T |
52590474 |
cagagccagatgctttgtc |
52590456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 53492512 - 53492403
Alignment:
| Q |
178 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagc |
277 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| |||| |||||||| |||||||| |||||||| ||||| | ||| |||| |||||| |||||| |
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|
| T |
53492512 |
cttacataataggcagtgacagtgccagcagagttgccaggaacaagtttaagttgcatatcaattttgccaaaaaggtattcatttttggattgaaagc |
53492413 |
T |
|
| Q |
278 |
cagagccaga |
287 |
Q |
| |
|
| || ||||| |
|
|
| T |
53492412 |
ctgaaccaga |
53492403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 53501949 - 53501876
Alignment:
| Q |
178 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaa |
251 |
Q |
| |
|
||||| ||||| || |||||| ||||||||||||| |||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
53501949 |
cttacgtaatatgcagtgacagtgccagcagagtttccagggacaagtttgagttgcatatcaatcttcccaaa |
53501876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 53498826 - 53498708
Alignment:
| Q |
178 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagc |
277 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| || | ||||| || | ||||| |||||||| ||||| ||||| |||| |||||| |||||| |
|
|
| T |
53498826 |
cttacataataggcagtgacagtgccagcagagtttcctggaacaagcttaatctgcatatcaattttgccaaataagtattcatttttggattgaaagc |
53498727 |
T |
|
| Q |
278 |
cagagccagaagatttgtc |
296 |
Q |
| |
|
| || ||||| | |||||| |
|
|
| T |
53498726 |
ctgaaccagaggctttgtc |
53498708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 176 - 296
Target Start/End: Complemental strand, 37188476 - 37188356
Alignment:
| Q |
176 |
tgcttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaa |
275 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| |||| |||||||| || ||||| |||||||| ||||| | ||| |||| |||||| |||| |
|
|
| T |
37188476 |
tgcttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaa |
37188377 |
T |
|
| Q |
276 |
gccagagccagaagatttgtc |
296 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
37188376 |
accagagccagaggatttgtc |
37188356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 40031102 - 40031176
Alignment:
| Q |
180 |
tacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaa |
254 |
Q |
| |
|
||||||||| || ||||||||||| |||||||| || | |||||||||| ||||||||||| | | |||||||| |
|
|
| T |
40031102 |
tacataatatgcagtgacaatgcctgcagagttccctggcacaagtttgatttgcatgtcaaatctaccaaacaa |
40031176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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