View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1254_low_60 (Length: 320)

Name: NF1254_low_60
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1254_low_60
NF1254_low_60
[»] chr6 (15 HSPs)
chr6 (1-308)||(5692990-5693297)
chr6 (1-201)||(5173980-5174180)
chr6 (1-199)||(5272849-5273047)
chr6 (3-191)||(5422050-5422238)
chr6 (52-191)||(5149820-5149959)
chr6 (1-191)||(5264315-5264505)
chr6 (3-103)||(5358203-5358303)
chr6 (28-191)||(5070511-5070674)
chr6 (65-191)||(5092785-5092911)
chr6 (49-191)||(5137715-5137857)
chr6 (47-191)||(5160611-5160755)
chr6 (88-191)||(5443951-5444054)
chr6 (45-142)||(5340450-5340547)
chr6 (14-191)||(5429446-5429623)
chr6 (50-138)||(5366406-5366494)
[»] chr4 (1 HSPs)
chr4 (83-191)||(25566888-25566996)
[»] scaffold0294 (1 HSPs)
scaffold0294 (61-96)||(3051-3086)


Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 5692990 - 5693297
Alignment:
Q  1 ttttgagaaaactataacagaaattatagactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5692990 ttttgagaaaactataacagaaattatagactcttcgattgcttgtagtagtgatgttgcaatgtgatctcctcttggaagtgaatcatcgtccataaaa 5693089  T
Q  101 acgaaaactccagcatttagaagagaagcatatagatgtgaaacgattgaagcacgggtgtcttcccctcgaaaacttaagaacacgtcattgctcctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5693090 acgaaaactccagcatttagaagagaagcatatagatgtgaaacgattgaagcacgggtgtcttcccctcgaaaacttaagaacacgtcattgctcctta 5693189  T
Q  201 acaatcctctgtccaaagtctctctgtccaaagtctctgtgtttgtttcagaggcacgggtgggaccaaattttaaaacatctattaaaccctctttgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5693190 acaatcctctgtccaaagtctctctgtccaaagtctctgtgtttgtttcagaggcacgggtgggaccaaattttaaaacatctattaaaccctctttgaa 5693289  T
Q  301 acctccta 308  Q
    ||||||||    
T  5693290 acctccta 5693297  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 5174180 - 5173980
Alignment:
Q  1 ttttgagaaaactataacagaaattatagactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataaaa 100  Q
    |||||||||||  ||||||||||||  ||||||||| |||||||||||||||||| ||| |||||||||||| ||| ||||||||||||||||| |||||    
T  5174180 ttttgagaaaatgataacagaaatttgagactcttcaattgcttgtagtagtgattttgaaatgtgatctcctctttgaagtgaatcatcgtccttaaaa 5174081  T
Q  101 acgaaaactccagcatttagaagagaagcatatagatgtgaaacgattgaagcacgggtgtcttcccctcgaaaacttaagaacacgtcattgctcctta 200  Q
    |||  || ||||   ||| |||||||||| ||||| ||||||  || |||||  || ||||| || ||||  |||||||||||||| |||| ||||||||    
T  5174080 acgctaattccattgttttgaagagaagcgtataggtgtgaagtgaatgaagtgcgcgtgtcctcgcctctgaaacttaagaacacttcatagctcctta 5173981  T
Q  201 a 201  Q
    |    
T  5173980 a 5173980  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 5273047 - 5272849
Alignment:
Q  1 ttttgagaaaactataacagaaattatagactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataaaa 100  Q
    |||||||||||  ||||||||||||  ||||  ||| |||||| ||||||||||| ||| |||||||||||| ||| ||||| |||||| |||| |||||    
T  5273047 ttttgagaaaatgataacagaaatttgagacctttcaattgctagtagtagtgattttgaaatgtgatctcctctttgaagtaaatcattgtccttaaaa 5272948  T
Q  101 acgaaaactccagcatttagaagagaagcatatagatgtgaaacgattgaagcacgggtgtcttcccctcgaaaacttaagaacacgtcattgctcctt 199  Q
    |||  || ||||   ||| |||||||||| ||||||||||||  || |||||  || ||||| || ||||  |||||||||||||| |||| |||||||    
T  5272947 acgttaattccattgttttgaagagaagcgtatagatgtgaagtgaatgaagtgcgcgtgtcctcgcctctgaaacttaagaacacttcatagctcctt 5272849  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 5422238 - 5422050
Alignment:
Q  3 ttgagaaaactataacagaaattatagactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataaaaac 102  Q
    ||||||||||||| | ||| |||  ||||| ||| |||||| |||| |||||||||| |||||||||||| ||| |||| |||||||||||| | |||||    
T  5422238 ttgagaaaactatgatagacattcgagactgttcaattgctcgtaggagtgatgttgaaatgtgatctcctctttgaagcgaatcatcgtccctgaaaac 5422139  T
Q  103 gaaaactccagcatttagaagagaagcatatagatgtgaaacgattgaagcacgggtgtcttcccctcgaaaacttaagaacacgtcat 191  Q
       || |||   |||| ||||||||||||| |||||||||  || ||| ||||| || || || |||| ||||||||||||||| ||||    
T  5422138 tttaattccgtaattttgaagagaagcatagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcat 5422050  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 5149820 - 5149959
Alignment:
Q  52 tgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataaaaacgaaaactccagcatttagaagagaagcatatagatgtgaaacgattgaa 151  Q
    |||||||| |||||||||||| |||  ||| |||||||| ||| |||||||   || |||||||||| ||||||||||||| |||||||||  || |||     
T  5149820 tgatgttgaaatgtgatctcctcttttaagagaatcatcatccctaaaaactttaattccagcattttgaagagaagcatagagatgtgaagtgaatgat 5149919  T
Q  152 gcacgggtgtcttcccctcgaaaacttaagaacacgtcat 191  Q
    || || || |||||||||| ||||||||||||||| ||||    
T  5149920 gcgcgcgtatcttcccctctaaaacttaagaacacttcat 5149959  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 5264315 - 5264505
Alignment:
Q  1 ttttgagaaaactataacagaaattatagactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataaaa 100  Q
    |||||||||||| || | ||||||| | |||||||| |||||  ||| || |||||||| |||||||||||| ||| ||||   || ||||||  |||||    
T  5264315 ttttgagaaaacaattaaagaaattttggactcttcaattgcacgtaataatgatgttgaaatgtgatctcctctttgaagctcattatcgtctctaaaa 5264414  T
Q  101 acgaaaactccagcatttagaagagaagcatatagatgtgaaacgattgaagcacgggtgtcttcccctcgaaaacttaagaacacgtcat 191  Q
    ||   || |||||||||| ||||||  |||||||||||||||||||  |||| ||| || || || || |  |||||||||||||||||||    
T  5264415 actttaattccagcattttgaagagctgcatatagatgtgaaacgaaggaagaacgagtatcctctcccctgaaacttaagaacacgtcat 5264505  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 5358203 - 5358303
Alignment:
Q  3 ttgagaaaactataacagaaattatagactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataaaaac 102  Q
    |||||||||| ||||||||||||  ||| ||||  |||||||| | ||||||| ||| |||||||||||| ||| ||||||||| ||| ||| |||||||    
T  5358203 ttgagaaaacgataacagaaatttgagaatcttgaattgcttgcattagtgattttgaaatgtgatctcccctttgaagtgaatgatcatccttaaaaac 5358302  T
Q  103 g 103  Q
    |    
T  5358303 g 5358303  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 5070511 - 5070674
Alignment:
Q  28 agactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataaaaacgaaaactccagcatttagaagagaa 127  Q
    ||||| ||| |||||| |||| |||||||||| |||||||||||| ||| |||| ||||| || ||| |||||||    | |||||  ||| ||||||||    
T  5070511 agactgttcaattgctcgtaggagtgatgttgaaatgtgatctcctctttgaagagaatcgtcttccctaaaaactttgattccagagtttcgaagagaa 5070610  T
Q  128 gcatatagatgtgaaacgattgaagcacgggtgtcttcccctcgaaaacttaagaacacgtcat 191  Q
    ||||| |||||||||  || |||||  || ||||| || ||||  |||||||||||||| ||||    
T  5070611 gcatagagatgtgaagtgaatgaagagcgagtgtcctctcctctgaaacttaagaacacatcat 5070674  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 5092911 - 5092785
Alignment:
Q  65 tgatctccacttggaagtgaatcatcgtccataaaaacgaaaactccagcatttagaagagaagcatatagatgtgaaacgattgaagcacgggtgtctt 164  Q
    |||||||| ||| |||| |||||||| ||| |||||||   || |||||||||| |||| |||||||| |||||||||  || ||| ||||| || ||||    
T  5092911 tgatctcctctttgaagcgaatcatcatccctaaaaacattaattccagcattttgaagtgaagcatagagatgtgaagtgaatgatgcacgagtatctt 5092812  T
Q  165 cccctcgaaaacttaagaacacgtcat 191  Q
      |||| ||||||||||||||| ||||    
T  5092811 ttcctctaaaacttaagaacacttcat 5092785  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 5137715 - 5137857
Alignment:
Q  49 tagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataaaaacgaaaactccagcatttagaagagaagcatatagatgtgaaacgatt 148  Q
    ||||||||||| |||||||||||| ||| ||||||||||||||||||| || ||   || |||||| ||| ||||||| |  |  |||||||||  ||      
T  5137715 tagtgatgttgaaatgtgatctcctctttgaagtgaatcatcgtccatgaagactttaattccagccttttgaagagatgagtgaagatgtgaagtgaag 5137814  T
Q  149 gaagcacgggtgtcttcccctcgaaaacttaagaacacgtcat 191  Q
    || | ||| |||||||||||||||||||| | |||||| ||||    
T  5137815 gatgaacgagtgtcttcccctcgaaaactcaggaacacttcat 5137857  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 191
Target Start/End: Original strand, 5160611 - 5160755
Alignment:
Q  47 agtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataaaaacgaaaactccagcatttagaagagaagcatatagatgtgaaacga 146  Q
    |||| ||||||||  || |||||||| |||  ||| |||||||||||| ||||||||  || |||||| ||| |||| | |||||| |||||||||  ||    
T  5160611 agtaatgatgttggtatttgatctcctctttcaagagaatcatcgtccctaaaaacgttaagtccagcgttttgaagtgcagcatagagatgtgaagtga 5160710  T
Q  147 ttgaagcacgggtgtcttcccctcgaaaacttaagaacacgtcat 191  Q
     ||| ||||| || ||||  |||| ||||||||||||||| ||||    
T  5160711 atgatgcacgagtatcttttcctctaaaacttaagaacacttcat 5160755  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 5444054 - 5443951
Alignment:
Q  88 atcgtccataaaaacgaaaactccagcatttagaagagaagcatatagatgtgaaacgattgaagcacgggtgtcttcccctcgaaaacttaagaacacg 187  Q
    |||||| ||||||||   || |||||| ||| |||||| |||||| |||||||||  ||  |||||||| || |||| ||||| ||||||||||||||||    
T  5444054 atcgtctataaaaaccttaattccagccttttgaagagcagcatacagatgtgaagtgaaggaagcacgagtatctttccctctaaaacttaagaacacg 5443955  T
Q  188 tcat 191  Q
    ||||    
T  5443954 tcat 5443951  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 5340547 - 5340450
Alignment:
Q  45 gtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataaaaacgaaaactccagcatttagaagagaagcatatagatgtgaa 142  Q
    ||||||||||||||| ||| ||||| || ||| |||| |||||||||||  |||||||   || |||||||||| |||| | |||||| |||||||||    
T  5340547 gtagtagtgatgttgaaatttgatcacctctttgaagcgaatcatcgtctctaaaaacagtaattccagcattttgaagtgcagcatagagatgtgaa 5340450  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 5429623 - 5429446
Alignment:
Q  14 ataacagaaattatagactcttcgattgcttgtagtagtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataaaaacgaaaactccag 113  Q
    ||||||||||||  ||||| ||| ||||| |||  || || ||||| |||||||||||| | |  ||| ||| |||| ||| |||||||   || |||||    
T  5429623 ataacagaaattcgagactgttcaattgcgtgtgataatgttgttgaaatgtgatctcctcctttaagagaaacatcatccctaaaaacagtaattccag 5429524  T
Q  114 catttagaagagaagcatatagatgtgaaacgattgaagcacgggtgtcttcccctcgaaaacttaagaacacgtcat 191  Q
    ||||| ||||||||||||| |||||||||  ||  ||  | || || ||||| |||| |||||||| |||||||||||    
T  5429523 cattttgaagagaagcatagagatgtgaagtgaacgatcctcgagtatcttcgcctctaaaacttaggaacacgtcat 5429446  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 5366494 - 5366406
Alignment:
Q  50 agtgatgttgcaatgtgatctccacttggaagtgaatcatcgtccataaaaacgaaaactccagcatttagaagagaagcatatagatg 138  Q
    |||||||||| |||||||||||| ||| |||| ||||| |||||| | |||||   || ||| || ||| ||||||||||||| |||||    
T  5366494 agtgatgttgaaatgtgatctcctctttgaagcgaatcgtcgtccctgaaaacacgaaatccggcgttttgaagagaagcatagagatg 5366406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 191
Target Start/End: Complemental strand, 25566996 - 25566888
Alignment:
Q  83 gaatcatcgtccataaaaacgaaaactccagcatttagaagagaagcatatagatgtgaaacgattgaagcacgggtgtcttcccctcgaaaacttaaga 182  Q
    |||||||||||| ||||||||   | |||||||||||||||||||||||  |||||||    ||  |||||||| ||||| ||||||| | |||||||||    
T  25566996 gaatcatcgtccttaaaaacgttgattccagcatttagaagagaagcattgagatgtgcggtgaaagaagcacgagtgtcctcccctctataacttaaga 25566897  T
Q  183 acacgtcat 191  Q
    |||| ||||    
T  25566896 acacttcat 25566888  T

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Target: scaffold0294 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 3051 - 3086
Alignment:
Q  61 aatgtgatctccacttggaagtgaatcatcgtccat 96  Q
    |||||||||||||||| |||||||||||||||||||    
T  3051 aatgtgatctccactttgaagtgaatcatcgtccat 3086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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