View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_62 (Length: 314)
Name: NF1254_low_62
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 286
Target Start/End: Complemental strand, 30893001 - 30892722
Alignment:
| Q |
9 |
tgagatgaagcaaagaaacataaatgtatattgtcaattatacgttcttctctcaagnnnnnnn-tattatacgtttacgatgaaaatatccaaacgtaa |
107 |
Q |
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| T |
30893001 |
tgagatgaagcaaagaaacataaatgtatattgtcaattatacattcttccctcaaggaaaaaaatattatacgtttacaatgaaagtatccaaacataa |
30892902 |
T |
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| Q |
108 |
aacatttgtaaaaaatgtatatttacaattgaaaaataac-tttgattaaaaagcacatttacaatttttaatccaaacatacattaagtgtgggtaaaa |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30892901 |
aacacttgtaaaaaatgtatatttacaattgaaaaataacatttaattaaaaagcacatttacaatttttaatccaaacatacattaagtgtgggaaaaa |
30892802 |
T |
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| Q |
207 |
ttcatctccaaggaacgaatagccttaaagtgtgtataattacatattgtccaactacattttatatcacacttcttttt |
286 |
Q |
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| T |
30892801 |
ttcatctccaaggaacgaatagccttaaagtgtgtctaattacattgtgtccaactacattttatatcacacttcttttt |
30892722 |
T |
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