View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1254_low_63 (Length: 313)

Name: NF1254_low_63
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1254_low_63
NF1254_low_63
[»] chr4 (18 HSPs)
chr4 (13-285)||(3956735-3957007)
chr4 (32-190)||(3985574-3985732)
chr4 (13-186)||(4023754-4023927)
chr4 (37-190)||(3816187-3816340)
chr4 (86-190)||(3800291-3800395)
chr4 (22-190)||(4217199-4217367)
chr4 (37-190)||(3808613-3808766)
chr4 (200-284)||(3808799-3808883)
chr4 (202-284)||(3985768-3985850)
chr4 (13-190)||(3921300-3921477)
chr4 (200-284)||(3816375-3816459)
chr4 (13-186)||(4000838-4001011)
chr4 (85-187)||(4008647-4008749)
chr4 (215-284)||(4217412-4217481)
chr4 (208-281)||(3921005-3921073)
chr4 (208-281)||(3934226-3934294)
chr4 (90-139)||(3934570-3934619)
chr4 (241-284)||(4001113-4001156)
[»] chr5 (2 HSPs)
chr5 (13-189)||(13396524-13396704)
chr5 (204-284)||(13396744-13396824)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 3957007 - 3956735
Alignment:
Q  13 taggtccaatttcacaagtttgtcaagagagaaaatagatggatggatgcttgtcaacccataacaaccttggatattcaatacattaagatttgtggct 112  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957007 taggtccaatttcaaaagtttgtcaagagagaaaatagacggatggatgcttgtcaacccataacaaccttggatattcaatacattaagatttgtggct 3956908  T
Q  113 tttgaaaagtctggtatcaccttcaggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcctgctacnnnnnnnnnttacgtaattaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||| ||||||||    
T  3956907 tttgaaaagtctggtatcaccttcaggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcctgctacaaaaaaaaattacataattaat 3956808  T
Q  213 ttataattctttgatttaaggtaaatttaatctagaagacacgtattcaattacctgcactccacaccaaagt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3956807 ttataattctttgatttaaggtaaatttaatctagaagacacgtattcaattatctgcactccacaccaaagt 3956735  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 3985574 - 3985732
Alignment:
Q  32 ttgtcaagagagaaaatagatggatggatgcttgtcaacccataacaaccttggatattcaatacattaagatttgtggcttttgaaaagtctggtatca 131  Q
    |||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |     
T  3985574 ttgtcaagagagaaaatagatggatggacgcttgtcaacatataacaacgttggatattcaataccttaagatttatggcttttgaaaagtctggtaact 3985673  T
Q  132 ccttcaggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcctgctac 190  Q
    ||||||||  | |||||   |||||||||||||||||||||||||  ||||||||||||    
T  3985674 ccttcaggtcttctgaaaaagagagtgtaacttcttttaaattaattagatcctgctac 3985732  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 4023754 - 4023927
Alignment:
Q  13 taggtccaatttcacaagtttgtcaagagagaaaatagatggatggatgcttgtcaacccataacaaccttggatattcaatacattaagatttgtggct 112  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||| |||| ||||   || ||||  |   ||||||||||| |||||||| || |||    
T  4023754 taggtccaaatgcacaagcttgtcaagagagaaaatagatggatggacgcttttcaaattatgacaatgtgccatattcaatactttaagattagtagct 4023853  T
Q  113 tttgaaaagtctggtatcaccttcaggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcctg 186  Q
    ||||||||||| |||| | |||||||||||   ||||  |||||| |||| |||||||||||||| ||||||||    
T  4023854 tttgaaaagtcaggtaactccttcaggaatttcgaataggagagtctaacctcttttaaattaactagatcctg 4023927  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 3816187 - 3816340
Alignment:
Q  37 aagagagaaaatagatggatggatgcttgtcaacccataacaaccttggatattcaatacattaagatttgtggcttttgaaaagtctggtatcaccttc 136  Q
    |||||| |||||||||||||||| |||| ||| |  |||||||| |  |||||| ||||| ||||||||| ||||||||||||||||||||| | ||||     
T  3816187 aagagataaaatagatggatggacgcttttcagctgataacaacttgagatatttaataccttaagatttatggcttttgaaaagtctggtaactccttt 3816286  T
Q  137 aggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcctgctac 190  Q
    |  ||   |||||  |||||| ||||||||||||||||||  ||||||||||||    
T  3816287 aataacattgaataagagagtctaacttcttttaaattaattagatcctgctac 3816340  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 3800291 - 3800395
Alignment:
Q  86 atattcaatacattaagatttgtggcttttgaaaagtctggtatcaccttcaggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcct 185  Q
    |||| ||||||||| ||||||   |||||||||||||  |||| | |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||     
T  3800291 atatgcaatacattcagattttcagcttttgaaaagttaggtaactccttcaagaatcctgaatgtgatagtgtaacttcttttaaattaactagatccg 3800390  T
Q  186 gctac 190  Q
    |||||    
T  3800391 gctac 3800395  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 4217199 - 4217367
Alignment:
Q  22 tttcacaagtttgtcaagagagaaaatagatggatggatgcttgtcaacccataacaaccttggatattcaatacattaagatttgtggcttttgaaaag 121  Q
    ||||||||| ||| || || ||||||||||||||||||  |||  ||||  |  |||| |||  |||| ||||||||| ||||||   ||||||||||||    
T  4217199 tttcacaagcttgccaggacagaaaatagatggatggacactttccaactgaggacaatcttcaatatgcaatacattcagattttcagcttttgaaaag 4217298  T
Q  122 tctggtatcaccttcaggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcctgctac 190  Q
    |  |||| | |||||| ||||||||||||||| ||| ||||||||||||||||||| |||||| |||||    
T  4217299 ttaggtaactccttcaagaatcctgaatgtgatagtttaacttcttttaaattaactagatccggctac 4217367  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 3808613 - 3808766
Alignment:
Q  37 aagagagaaaatagatggatggatgcttgtcaacccataacaaccttggatattcaatacattaagatttgtggcttttgaaaagtctggtatcaccttc 136  Q
    ||||||||||||||||||||||| |||| ||||| | | |||   || |||||  ||| | || |||||||||||||||||||||||||||| | ||||     
T  3808613 aagagagaaaatagatggatggacgcttatcaactctttacagattttgatatgaaatgccttcagatttgtggcttttgaaaagtctggtaactccttt 3808712  T
Q  137 aggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcctgctac 190  Q
    | ||||  |||||  | || | ||||||||||||||||||  ||||||||||||    
T  3808713 aagaattttgaattagtgaatctaacttcttttaaattaattagatcctgctac 3808766  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 3808799 - 3808883
Alignment:
Q  200 ttacgtaattaatttataattctttgatttaaggtaaatttaatctagaagacacgtattcaattacctgcactccacaccaaag 284  Q
    |||| |||||| ||||||||||  ||| ||||| |||||||||| | |||||||||||| |||||||||||||||||| ||||||    
T  3808799 ttacataattattttataattccctgaattaagataaatttaatttggaagacacgtatccaattacctgcactccacgccaaag 3808883  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 3985768 - 3985850
Alignment:
Q  202 acgtaattaatttataattctttgatttaaggtaaatttaatctagaagacacgtattcaattacctgcactccacaccaaag 284  Q
    |||||||||||||||||||| |||| ||  | ||||||||||||   |||||| |||||||||||||| ||||||||||||||    
T  3985768 acgtaattaatttataattccttgaattttgataaatttaatctgatagacacatattcaattacctgtactccacaccaaag 3985850  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 3921477 - 3921300
Alignment:
Q  13 taggtccaatttcacaagtttgtcaagagagaaaatagatggatggatgcttgtcaacccataacaaccttggatattcaatacattaagatttgtggct 112  Q
    ||||||||| | |||||| || |||||||  |||||||||||||||| ||||  |||   || |||| |   || | ||||||| |||||||||||||||    
T  3921477 taggtccaaatgcacaagcttctcaagagtaaaaatagatggatggacgctttccaaattatcacaagcagtgacactcaatactttaagatttgtggct 3921378  T
Q  113 tttgaaaagtctggtatcaccttcaggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcctgctac 190  Q
    |||||||||||||||| | |||||||||| | || |     || ||||||||| ||||||||||| |||| |||||||    
T  3921377 tttgaaaagtctggtaactccttcaggaagcttgcacaaatgattgtaacttcctttaaattaactagattctgctac 3921300  T

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Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 3816375 - 3816459
Alignment:
Q  200 ttacgtaattaatttataattctttgatttaaggtaaatttaatctagaagacacgtattcaattacctgcactccacaccaaag 284  Q
    |||| |||||| |||||||||| |||| ||||| |||||||||| | ||||| |  ||| |||||||||||||||||||||||||    
T  3816375 ttacataattattttataattccttgaattaagataaatttaatttggaagataaatatccaattacctgcactccacaccaaag 3816459  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 4000838 - 4001011
Alignment:
Q  13 taggtccaatttcacaagtttgtcaagagagaaaatagatggatggatgcttgtcaacccataa-caaccttggatattcaatacattaagatttgtggc 111  Q
    ||||||||||| |||||| || || ||||||||||||||||| |||| ||||  |||   |||  ||| ||  |||||||||||| ||||||||||| ||    
T  4000838 taggtccaattgcacaagcttttctagagagaaaatagatgggtggacgctttccaatg-ataggcaatctgtgatattcaataccttaagatttgtagc 4000936  T
Q  112 ttttgaaaagtctggtatcaccttcaggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcctg 186  Q
    |||||||||||||||||   | || ||||| | ||||   | |||| |||| |||||||||||||| ||||||||    
T  4000937 ttttgaaaagtctggtaattctttaaggaaccttgaactggtgagtctaacctcttttaaattaactagatcctg 4001011  T

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Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 4008647 - 4008749
Alignment:
Q  85 gatattcaatacattaagatttgtggcttttgaaaagtctggtatcaccttcaggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcc 184  Q
    |||||||||||| ||||||||||| |||||||||| |||||| | | |||||| | ||| |||||   ||||| ||| ||||| ||||||||| ||||||    
T  4008647 gatattcaatactttaagatttgtagcttttgaaaggtctggcaactccttcaaggatcgtgaatcaaagagtctaaattcttgtaaattaactagatcc 4008746  T
Q  185 tgc 187  Q
    |||    
T  4008747 tgc 4008749  T

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Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 4217412 - 4217481
Alignment:
Q  215 ataattctttgatttaaggtaaatttaatctagaagacacgtattcaattacctgcactccacaccaaag 284  Q
    ||||||| |||| ||||| ||||||| ||||  ||||||| |||||||||||||| ||||||||||||||    
T  4217412 ataattccttgaattaagataaatttcatctgaaagacacatattcaattacctgtactccacaccaaag 4217481  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 3921073 - 3921005
Alignment:
Q  208 ttaatttataattctttgatttaaggtaaatttaatctagaagacacgtattcaattacctgcactccacacca 281  Q
    |||||||||||||| |||| ||||| ||||||||||     |||||| |||||||||||||| |||||||||||    
T  3921073 ttaatttataattcattgaattaagataaatttaat-----agacacatattcaattacctgtactccacacca 3921005  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 3934294 - 3934226
Alignment:
Q  208 ttaatttataattctttgatttaaggtaaatttaatctagaagacacgtattcaattacctgcactccacacca 281  Q
    |||||||||||||| |||| ||||| ||||||||||     |||||| |||||||||||||| |||||||||||    
T  3934294 ttaatttataattcattgaattaagataaatttaat-----agacacatattcaattacctgtactccacacca 3934226  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 3934619 - 3934570
Alignment:
Q  90 tcaatacattaagatttgtggcttttgaaaagtctggtatcaccttcagg 139  Q
    ||||||| ||||||||||||||||||||||||||||| | | ||||||||    
T  3934619 tcaatactttaagatttgtggcttttgaaaagtctggcaactccttcagg 3934570  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 284
Target Start/End: Original strand, 4001113 - 4001156
Alignment:
Q  241 aatctagaagacacgtattcaattacctgcactccacaccaaag 284  Q
    ||||| || ||||| |||||||||||||||||||||||||||||    
T  4001113 aatctggatgacacatattcaattacctgcactccacaccaaag 4001156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 13396524 - 13396704
Alignment:
Q  13 taggtccaatttcacaagtttgtcaagagagaaaatagatggatggatgcttgtc----aacccataacaaccttggatattcaatacattaagatttgt 108  Q
    ||||||||| | |||||| ||||||||||||||||| |||||||||| |||||||    |||| || ||| | |   ||||||||||| |||||||||||    
T  13396524 taggtccaaatgcacaagcttgtcaagagagaaaattgatggatggacgcttgtcgatcaacctattacaccatctcatattcaataccttaagatttgt 13396623  T
Q  109 ggcttttgaaaagtctggtatcaccttcaggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcctgcta 189  Q
    ||| |||||||||||||||| | |||||||| ||  ||||||  |||||||||||| |||||||||||| |||||||||||    
T  13396624 ggcgtttgaaaagtctggtaactccttcaggtattttgaatggcagagtgtaacttgttttaaattaactagatcctgcta 13396704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 13396744 - 13396824
Alignment:
Q  204 gtaattaatttataattctttgatttaaggtaaatttaatctagaagacacgtattcaattacctgcactccacaccaaag 284  Q
    |||||||||||||||||| |||| ||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  13396744 gtaattaatttataattccttgaattaagataaatttaatctgaaagacacgtattcaattacctgtactccacaccaaag 13396824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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