View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_68 (Length: 296)
Name: NF1254_low_68
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 42802801 - 42802632
Alignment:
| Q |
74 |
aagttataagtgtattttttgaaaaatcacgatggatcaccatgattgcgacacgccatagtgataccaaacctacactcaagagaatctcttaaaagga |
173 |
Q |
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| T |
42802801 |
aagttataagtgtatttttcgaaaaatcacgatggatcaccataattgtgacacgccatagtgataccaaacctacactcaagagaatctcttaaaagga |
42802702 |
T |
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| Q |
174 |
gggtaaaatatagaattttcattttgattcttagatcacattgttgaaactgaaaagatacatattcttc |
243 |
Q |
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| T |
42802701 |
ggggaaaatatagaattttcattttgattcttagattacattgttgaaactgaaaagatacatattcttc |
42802632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 25514721 - 25514880
Alignment:
| Q |
74 |
aagttataagtgtattttttgaaaaatcacgatggatcaccatgattgcgacacgccatagtgataccaa----acctacactcaagagaatctcttaaa |
169 |
Q |
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| T |
25514721 |
aagttataagtgtattttttgaaaaatcacgatggatcaccatgattgtgacacaccacagtgataccatgcatacatacacttaagagaatctcttaaa |
25514820 |
T |
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| Q |
170 |
aggagggtaaaatatagaattttcattttgattcttagatcacattgttgaaactgaaaa |
229 |
Q |
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| T |
25514821 |
aggaggggaaaatatagaattttcattttgattcttagattacattcttgaaactgaaaa |
25514880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 25520654 - 25520494
Alignment:
| Q |
74 |
aagttataagtgtatttttt-gaaaaatcacgatggatcaccatgattgcgacacgccatagtgataccaaacctaca----ctcaagagaatctcttaa |
168 |
Q |
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| T |
25520654 |
aagttataagtgtatttttttgaaaaatcacgatggatcaccatgattgtgacacaccacagtgataccatgcatacatatacttaagagaatctcttaa |
25520555 |
T |
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| Q |
169 |
aaggagggtaaaatatagaattttcattttgattcttagatcacattgttgaaactgaaaa |
229 |
Q |
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| T |
25520554 |
aaggagggaaaaatatagaattttcattttgattcttagattacattcttgaaactgaaaa |
25520494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 49267 - 49212
Alignment:
| Q |
167 |
aaaaggagggtaaaatatagaattttcattttgattcttagatcacattgttgaaa |
222 |
Q |
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| T |
49267 |
aaaaggagcggaaaataaagaattttcatttggattcttagattacattgttgaaa |
49212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 5277009 - 5277048
Alignment:
| Q |
81 |
aagtgtattttttgaaaaatcacgatggatcaccatgatt |
120 |
Q |
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| T |
5277009 |
aagtgtattttttgaaaaatcatgatagatcaccatgatt |
5277048 |
T |
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