View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_69 (Length: 295)
Name: NF1254_low_69
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 4587555 - 4587803
Alignment:
| Q |
11 |
catagggtctgactaggcttatctaagttaaatactgttagttagatgtcgtttgagatttattttggaaatgatagaataaaaaagttgagaaacactt |
110 |
Q |
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| T |
4587555 |
catagggtctgactaggcttatctaagttaaatactgttagttagatgtcgttcgagatttattttggaattgatagaataaaaaagttgagaaacactt |
4587654 |
T |
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| Q |
111 |
tatattgtgatcctaagattactaatataaccaaattccatctaatcacaacnnnnnnnnnnnnnnataagcaataatcataactaacttataactatct |
210 |
Q |
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| T |
4587655 |
tatattgtgatcctaagattactaatataaccaaattccatctaatcacaa------tttttttttacaagcaataatcataactaacttataaatatct |
4587748 |
T |
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| Q |
211 |
tcaaaattattatattaattttatcaaacaatatcattctttgctagggtggaaat |
266 |
Q |
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| T |
4587749 |
ttaaaaatattatattaa-tttatcaaacaatatcattatttgctagggtggaaat |
4587803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 4572974 - 4573156
Alignment:
| Q |
28 |
cttatctaagttaaatactgttagttagatgtcgtttgagatttattttggaaatgatagaataaaaaagttgagaaacactttatattgtgatcctaag |
127 |
Q |
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| T |
4572974 |
cttatctaacttaaatactattagttagacatcgtttgggatttattttggaattgatagaataataaagttgagaaacactgtatattgtgatcctaag |
4573073 |
T |
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| Q |
128 |
attactaatataaccaa-attccatctaatcacaacnnnnnnnnnnnnnnataagcaataatcataactaacttataactatctt |
211 |
Q |
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| T |
4573074 |
atcactaatataaccaaccttgcatctaatcataac--taacttttttttataagcaataatcataactaacttataactatctt |
4573156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 4566016 - 4566117
Alignment:
| Q |
46 |
tgttagttagatgtcgtttgagatttattttggaaatgatagaataaaaaagttgagaaacactttatattgtgatcctaagattactaatataaccaaa |
145 |
Q |
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||||| |||||||||||||||||||||||| |||| ||||| |||| ||||||||||||| |||||||||||||||||||| || ||||||||||||||| |
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| T |
4566016 |
tgttacttagatgtcgtttgagatttatttgggaattgataaaatagaaaagttgagaaaaactttatattgtgatcctaaaatcactaatataaccaaa |
4566115 |
T |
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| Q |
146 |
tt |
147 |
Q |
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|| |
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| T |
4566116 |
tt |
4566117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 4559223 - 4559276
Alignment:
| Q |
185 |
taatcataactaacttataactatcttcaaaattattatattaattttatcaaa |
238 |
Q |
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||||||||||||||||||||||||||| |||| ||| | | |||||||| |||| |
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| T |
4559223 |
taatcataactaacttataactatcttgaaaaatatcaaactaattttaacaaa |
4559276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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