View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_75 (Length: 278)
Name: NF1254_low_75
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_75 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 40 - 233
Target Start/End: Original strand, 1532611 - 1532819
Alignment:
| Q |
40 |
tgaacatgaaaacttgcggtgctgagaccctaatcaagacagaccattagtgcatatcttaatagtaacaattcatgcctacatcattgatgatgtttgg |
139 |
Q |
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| T |
1532611 |
tgaacatgaaaatttgtggtgctgagaccctaatcaagacagaccattagtgcatatcttaacagtaacaattcatgcctacatcattgatgatgtttgg |
1532710 |
T |
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| Q |
140 |
tgaattttttccccaatgat-------------atgaattactgtcctt--ttcttctttcaattacccttttctgagggcattgtatgcaagatttaaa |
224 |
Q |
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| T |
1532711 |
tgaattttttccccaatgatatgaattatgaagatgaattactttcttttcttcttctttcaattacccttttctgagggcattgtatgcaagatttaaa |
1532810 |
T |
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| Q |
225 |
tggtatttg |
233 |
Q |
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| T |
1532811 |
tggtatttg |
1532819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 7314948 - 7314898
Alignment:
| Q |
117 |
cctacatcattgatgatgtttggtgaattttttccccaatgatatgaatta |
167 |
Q |
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| T |
7314948 |
cctacatcattgatgatgttttctaaatatttttcccaatgatatgaatta |
7314898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 7315009 - 7314977
Alignment:
| Q |
70 |
taatcaagacagaccattagtgcatatcttaat |
102 |
Q |
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| T |
7315009 |
taataaagacagaccattagtgcatatcttaat |
7314977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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