View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1254_low_79 (Length: 270)
Name: NF1254_low_79
Description: NF1254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1254_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 43985626 - 43985814
Alignment:
| Q |
53 |
aatctacccaaaaagttttcaattttggttaaaagttcctaataaatacttagaataagataatggaatgattcaatttaactttactttgacactctct |
152 |
Q |
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| T |
43985626 |
aatcaacccaaaaagttttcaatcttggttaaaagttcctaataaatacttagaataagataatggaatgattcaatttaactttactttgacactctct |
43985725 |
T |
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| Q |
153 |
ctctgtaattggagagaacaatcacactaaagttttgtgtggatcattggtttctacaaccatatccaaaaggtaggtttcacctatgc |
241 |
Q |
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| T |
43985726 |
ctctgtaattggagagaacaatcacactaaagttttgtgtggatcattggtttctacaaccatatccaaaaggtaggtttcacttatgc |
43985814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 44004232 - 44004381
Alignment:
| Q |
66 |
agttttcaattttggttaaaagttcctaataaatacttagaataagataatggaatgattcaatttaactttactttgacactctctctctgtaattgga |
165 |
Q |
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||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||||| |||||||| || ||||||||||||| |
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| T |
44004232 |
agttttcaattttgg----aagttcctaataaaaacatagaataagataatgaaatgattcaatttaactttac-ttgacact-tc-ctctgtaattgga |
44004324 |
T |
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| Q |
166 |
gagaacaatcacactaaagttttgtgtggatcattggtttctacaaccatatccaaa |
222 |
Q |
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| T |
44004325 |
gaaaataattaccctgaagttttgtgtggctcattagtttccgcaaccacatccaaa |
44004381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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